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Korkontzelos, I., Mu, T. en Ananiadou, S., ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials (2012), in: BMC Medical Informatics and Decision Making, 12:Suppl 1(S3)

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Miwa, M., Thompson, P. en Ananiadou, S., Boosting automatic event extraction from the literature using domain adaptation and coreference resolution (2012), in: Bioinformatics, 28:13(1759-1765)

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Miwa, M., Thompson, P., McNaught, J., Kell, D. B. en Ananiadou, S., Extracting semantically enriched events from biomedical literature (2012), in: BMC Bioinformatics, 13(108)

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Nawaz, R., Thompson, P. en Ananiadou, S., Meta-Knowledge Annotation at the Event Level: Comparison between Abstracts and Full Papers, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), pagina's 24-31, 2012

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Kontonatsios, G., Korkontzelos, I. en Ananiadou, S., Developing Multilingual Text Mining Workflows in UIMA and U-Compare, in: Proceedings of the 17th International conference on Applications of Natural Language Processing to Information Systems, Groningen, Netherlands, pagina's 82 - 93, Springer, 2012

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MihÄƒilÄƒ, C., Batista-Navarro, R. en Ananiadou, S., Analysing Entity Type Variation across Biomedical Subdomains, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), Istanbul, Turkey, pagina's 1-7, 2012

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Krallinger, M., Vazquez, M., Leitner, F., Salgado, D., Chatr-aryamontri, A., Winter, A., Perfetto, L., Briganti, L., Licata, L., Iannuccelli, M., Castagnoli, L., Cesareni, G., Tyers, M., Schneider, G., Rinaldi, F., Leaman, R., Gonzalez, G., Matos, S., Kim, S., Wilbur, W., Rocha, L., Shatkay, H., Tendulkar, A., Agarwal, S., Liu, F., Wang, X., Rak, R., Noto, K., Elkan, C. en Lu, Z., The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text (2011), in: BMC Bioinformatics, 12:Suppl 8(S3)

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Black, W.J., Procter, R., Gray, S. en Ananiadou, S., A data and analysis resource for an experiment in text mining a collection of micro-Âblogs on a political topic, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pagina's 2083-2088, 2012

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. en Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Rak, R., Rowley, A. en Ananiadou, S., Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pagina's 2971-2976, 2012

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Rak, R., Rowley, A., Black, W.J. en Ananiadou, S., Argo: an integrative, interactive, text mining-based workbench supporting curation (2012), in: Database: The Journal of Biological Databases and Curation, 2012

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Wang, X., Thompson, P. en Ananiadou, S., Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pagina's 1148-1155, 2012

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Nawaz, R., Thompson, P. en Ananiadou, S., Identification of Manner in Bio-Events, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pagina's 3505-3510, 2012

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Stenetorp, P., Pyysalo, S., TopiÄ‡, G., Ohta, T., Ananiadou, S. en Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pagina's 102-107, Association for Computational Linguistics, 2012

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MihÄƒilÄƒ, C. en Batista-Navarro, R., What's in a Name? Entity Type Variation across Two Biomedical Subdomains, in: Proceedings of the Student Research Workshop at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pagina's 38-45, Association for Computational Linguistics, 2012

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Mu, T., Goulermas, J. Y, Tsujii, J. en Ananiadou, S., Proximity-based Frameworks for Generating Embeddings from Multi-Output Data (2012), in: IEEE Transactions on Pattern Analysis and Machine Intelligence

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Kano, Y., BjÃ¶rne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., SÃ¦tre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. en Tsujii, J., U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481)

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Kontonatsios, G., Korkontzelos, I., Kolluru, B. en Ananiadou, S., Adding Text Mining Workflows as Web Services to the BioCatalogue, in: Proceedings of the 4th International Workshop on Semantic Web Aplications and Tools for the Life Sciences (SWAT4LS)., 2011

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Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. en Tsujii, J., Extracting Bio-Molecular Events From Literatureâ€”The BioNLPâ€™09 Shared Task (2011), in: Computational Intelligence, 27:4(513-540)

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Rosner, M., Attard, A., Thompson, P., Gatt, A. en Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Proceedings of the 5th Language & Technology Conference (LTC'2011), 2011

Stenetorp, P., Pyysalo, S., Ananiadou, S. en Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)

Batista-Navarro, R. en Ananiadou, S., Adapting the Cluster Ranking Supervised Model to Resolve Coreferences in the Drug Literature, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

Ohta, T., Pyysalo, S., Ananiadou, S. en Tsujii, J., Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Pyysalo, S., Ohta, T. en Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Kolluru, B., Nakjang, S., Hirt, R. P, Wipat, A. en Ananiadou, S., Automatic extraction of microorganisms and their habitats from free text using text mining workflows (2011), in: Journal of Integrative Bioinformatics, 8:2(184)

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