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Ohta, T., Tateisi, Y., Kim, J.-D., Yakushiji, A. und Tsujii, J., Linguistic and Biological Annotations of Biological Interaction Events, in: Proceedings of The Fifth International Conference on Language Resources and Evaluation (LREC 2006), Seiten 1402--1405, 2006

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Ninomiya, T., Matsuzaki, T., Tsuruoka, Y., Miyao, Y. und Tsujii, J., Extremely Lexicalized Models for Accurate and Fast HPSG Parsing, in: Proceedings of EMNLP 2006, Seiten 155--163, 2006

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NenadiÄ‡, G. und Ananiadou, S., Mining Semantically Related Terms from Biomedical Literature (2006), in: ACM Transactions on Asian Language Information Processing (TALIP), 5:1(22--43)

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Miyao, Y., Ohta, T., Masuda, K., Tsuruoka, Y., Yoshida, K., Ninomiya, T. und Tsujii, J., Semantic Retrieval for the Accurate Identification of Relational Concepts in Massive Textbases, in: Proceedings of COLING-ACL 2006, Seiten 1017--1024, 2006

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Mima, H., Ananiadou, S. und Matsushima, K., Terminology-Based Knowledge Mining for New Knowledge Discovery (2006), in: ACM Transactions on Asian Language Information Processing (TALIP), 5:1(74--88)

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Kim, J.-D. und Tsujii, J., Corpora and their Annotation, in: Text Mining for Biology and Biomedicine, Artech House, 2006

Okanohara, D., Miyao, Y., Tsuruoka, Y. und Tsujii, J., Improving the Scalability of Semi-Markov Conditional Random Fields for Named Entity Recognition, in: Proceedings of ACL 2006, 2006

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Chun, H.-W., Tsuruoka, Y., Kim, J.-D., Shiba, R., Nagata, N., Hishiki, T. und Tsujii, J., Automatic Recognition of Topic-Classified Relations between Prostate Cancer and Genes from Medline Abstracts, in: Proceedings of the Second International Symposium on Semantic Mining in Biomedicine, Seiten 5-12, 2006

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Chun, H.-W., Tsuruoka, Y., Kim, J.-D., Shiba, R., Nagata, N., Hishiki, T. und Tsujii, J., Extraction of Gene-Disease Relations from MedLine using Domain Dictionaries and Machine Learning, in: Proceedings of the Pacific Symposium on Biocomputing (PSB) 11, Seiten 4-15, 2006

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Ananiadou, S., Kell, D. B. und Tsujii, J., Text mining and its potential applications in systems biology (2006), in: Trends in Biotechnology, 24:12(571 - 579)

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Second International Symposium on Semantic Mining in Biomedicine (SMBM), 2006

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Kim, J.-D., Ananiadou, S. und Tsujii, J., Ontology based Semantic Annotation for Knowledge Extraction, in: 2nd International Digital Curation Conference, 2006

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Ananiadou, S. und NenadiÄ‡, G., Automatic Terminology Management in Biomedicine, in: Text Mining for Biology and Biomedicine, Seiten 67--98, Artech House, Inc., 2006

Ananiadou, S. und McNaught, J., Introduction to Text Mining in Biology, in: Text Mining for Biology and Biomedicine, Seiten 1--12, Artech House, Inc., 2006

Text Mining for Biology And Biomedicine, Artech House, Inc., 2006

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Yoshida, K. und Tsujii, J., Reranking for Biomedical Named-Entity Recognition, in: Proceedings of BioNLP 2007: Biological, translational, and clinical language processing, Seiten 209--216, 2007

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Yoshida, K., Tsuruoka, Y., Miyao, Y. und Tsujii, J., Ambiguous Part-of-Speech Tagging for Improving Accuracy and Domain Portability of Syntactic Parsers, in: Proceedings of the Twentieth International Joint Conference on Artificial Intelligence (IJCAI-07), Seiten 1783-1788, 2007

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Tsuruoka, Y., McNaught, J., Tsujii, J. und Ananiadou, S., Learning string similarity measures for gene/protein name dictionary look-up using logistic regression (2007), in: Bioinformatics, 23:20(2768-2774)

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Sasaki, Y., Rea, B. und Ananiadou, S., Multi-topic Aspects in Clinical Text Classification, in: BIBM '07: Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine, Seiten 62--70, IEEE Computer Society, 2007

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Sagae, K. und Tsujii, J., Dependency parsing and domain adaptation with LR models and parser ensembles, in: Proceedings of the CoNLL 2007 Shared Task in the Joint Conferences on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL'07 shared task), Seiten 1044-1050, 2007

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Sagae, K., Miyao, Y. und Tsujii, J., HPSG parsing with shallow dependency constraints, in: Proceedings of the 44th Meeting of the Association for Computational Linguistics, Seiten 624--631, 2007

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SÃ¦tre, R., Sagae, K. und Tsujii, J., Syntactic features for protein-protein interaction extraction, in: Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), Seiten 6.1-6.14, CEUR Workshop Proceedings (CEUR-WS.org), 2008

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Rea, B. und Ananiadou, S., Text Mining Services to Support E-Research, in: UK e-Science All Hands Meeting, 2007

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Piao, S., Ananiadou, S., Tsuruoka, Y., Sasaki, Y. und McNaught, J., Mining Opinion Polarity Relations of Citations, in: Proceedings of the 7th International Workshop on Computational Semantics, Seiten 366-371, 2007

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Piao, S., Ananiadou, S. und McNaught, J., Integrating Annotation Tools into UIMA for Interoperability, in: Proceedings of the UK e-Science AHM Conference 2007, Seiten 575--582, 2007

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