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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Rak, R., Rowley, A. und Ananiadou, S., Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), Seiten 2971-2976, 2012

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Rak, R., Rowley, A., Black, W.J. und Ananiadou, S., Argo: an integrative, interactive, text mining-based workbench supporting curation (2012), in: Database: The Journal of Biological Databases and Curation, 2012

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Wang, X., Thompson, P. und Ananiadou, S., Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), Seiten 1148-1155, 2012

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Nawaz, R., Thompson, P. und Ananiadou, S., Identification of Manner in Bio-Events, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), Seiten 3505-3510, 2012

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Stenetorp, P., Pyysalo, S., TopiÄ‡, G., Ohta, T., Ananiadou, S. und Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, Seiten 102-107, Association for Computational Linguistics, 2012

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MihÄƒilÄƒ, C. und Batista-Navarro, R., What's in a Name? Entity Type Variation across Two Biomedical Subdomains, in: Proceedings of the Student Research Workshop at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, Seiten 38-45, Association for Computational Linguistics, 2012

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Mu, T., Goulermas, J. Y, Tsujii, J. und Ananiadou, S., Proximity-based Frameworks for Generating Embeddings from Multi-Output Data (2012), in: IEEE Transactions on Pattern Analysis and Machine Intelligence

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Kano, Y., BjÃ¶rne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., SÃ¦tre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. und Tsujii, J., U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481)

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Kontonatsios, G., Korkontzelos, I., Kolluru, B. und Ananiadou, S., Adding Text Mining Workflows as Web Services to the BioCatalogue, in: Proceedings of the 4th International Workshop on Semantic Web Aplications and Tools for the Life Sciences (SWAT4LS)., 2011

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Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. und Tsujii, J., Extracting Bio-Molecular Events From Literatureâ€”The BioNLPâ€™09 Shared Task (2011), in: Computational Intelligence, 27:4(513-540)

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Rosner, M., Attard, A., Thompson, P., Gatt, A. und Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Proceedings of the 5th Language & Technology Conference (LTC'2011), 2011

Stenetorp, P., Pyysalo, S., Ananiadou, S. und Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)

Batista-Navarro, R. und Ananiadou, S., Adapting the Cluster Ranking Supervised Model to Resolve Coreferences in the Drug Literature, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

Ohta, T., Pyysalo, S., Ananiadou, S. und Tsujii, J., Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Pyysalo, S., Ohta, T. und Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Kolluru, B., Nakjang, S., Hirt, R. P, Wipat, A. und Ananiadou, S., Automatic extraction of microorganisms and their habitats from free text using text mining workflows (2011), in: Journal of Integrative Bioinformatics, 8:2(184)

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Thompson, P., Nawaz, R., McNaught, J. und Ananiadou, S., Enriching a biomedical event corpus with meta-knowledge annotation (2011), in: BMC Bioinformatics, 12(393)

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Thompson, P., McNaught, J., Montemagni, S., Calzolari, N., del Gratta, R., Lee, V., Marchi, S., Monachini, M., Pezik, P., Quochi, V., Rupp, C. J., Sasaki, Y., Venturi, G., Rebholz-Schuhmann, D. und Ananiadou, S., The BioLexicon: a large-scale terminological resource for biomedical text mining (2011), in: BMC Bioinformatics, 12(397)

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Thompson, P., Kano, Y., McNaught, J., Pettifer, S., Attwood, T. K., Keane, J. und Ananiadou, S., Promoting Interoperability of Resources in META-SHARE, in: Proceedings of the IJCNLP Workshop on Language Resources, Technology and Services in the Sharing Paradigm (LRTS), Seiten 50-58, 2011

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Korkontzelos, I., Mu, T., Restificar, A. und Ananiadou, S., Text mining for efficient search and assisted creation of clinical trials, in: Proceedings of the ACM Fourth International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO 2011), 2011

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Wang, X., McKendrick, I., Barrett, I., Dix, I., French, T., Tsujii, J. und Ananiadou, S., Automatic Extraction of Angiogenesis Bio-Process from Text (2011), in: Bioinformatics, 27:19(2730-2737)

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Pyysalo, S., SÃ¦tre, R., Tsujii, J. und Salakoski, T., Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Seiten 149--152, 2008

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. und Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), Seiten 103--108, 2009

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Pyysalo, S., Ohta, T. und Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010

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