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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S. en Tsujii, J., Investigating heterogeneous protein annotations toward cross-corpora utilization (2009), in: BMC Bioinformatics, 10(403)

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Ananiadou, S., McNaught, J., Thomas, J. en Oliver, S., Evaluating a text mining based educational search portal, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pagina's 3344--3350, 2010

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Nawaz, R., Thompson, P., McNaught, J. en Ananiadou, S., Meta-Knowledge Annotation of Bio-Events, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pagina's 2498--2505, 2010

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Zhang, Y., Matsuzaki, T. en Tsujii, J., A Simple Approach for HPSG Supertagging Using Dependency Information, in: Proceedings of NAACL-HLT 2010, 2010

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Lyte, V., Jones, S., Ananiadou, S. en Kerr, L., UK Institutional Repository Search: Innovation and Discovery (2009), in: Ariadne, 61

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Wang, X., Tsujii, J. en Ananiadou, S., Disambiguating the Species of Biomedical Named Entities Using Natural Language Parsers (2010), in: Bioinformatics, 26:5(661--667)

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Thompson, P., Iqbal, S. A., McNaught, J. en Ananiadou, S., Construction of an annotated corpus to support biomedical information extraction (2009), in: BMC Bioinformatics, 10(349)

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Zhang, Y., Matsuzaki, T. en Tsujii, J., HPSG Supertagging: A Sequence Labeling View, in: Proceedings of 11th International Conference on Parsing Technology (IWPT'09), pagina's 210--213, 2009

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SÃ¦tre, R., Kazuhiro, Y., Miwa, M., Matsuzaki, T., Kano, Y. en Tsujii, J., AkaneRE Relation Extraction: Protein Interaction and Normalization in the BioCreAtIvE II.5 Challenge, in: BioCreative II.5 Workshop 2009 special session | Digital Annotations, pagina's 33, CNIO, 2009

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Hatori, J., Miyao, Y. en Tsujii, J., On Contribution of Sense Dependencies to Word Sense Disambiguation (2009), in: Information and Media Technologies, 4:4(1129--1155)

Tekiner, F., Ananiadou, S., Tsuruoka, Y. en Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009

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Sasaki, Y., McNaught, J. en Ananiadou, S., The Value of an In-Domain Lexicon in Genomics QA, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), pagina's 47--55, 2009

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Sasaki, Y., Thompson, P., McNaught, J. en Ananiadou, S., Biological Event Recognition with Textual Induction, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), pagina's 91--96, 2009

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Matsuoka, Y., Ghosh, S., Kikuchi, N., SÃ¦tre, R., Kemper, B., Okazaki, N., Ananiadou, S., Tsujii, J. en Kitano, H., Community Platform for Pathway Model Building, in: 10th International Conference on Systems Biology, pagina's 139-140, Stanford University, 2009

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Wu, X., Okazaki, N. en Tsujii, J., Semi-Supervised Lexicon Mining from Parenthetical Expressions in Monolingual Web Pages, in: Proceedings of HLT-NAACL 2009, pagina's 424--432, 2009

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Okanohara, D. en Tsujii, J., Text Categorization with All Substring Features, in: SIAM International Conference on Data Mining (SDM), 2009

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Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. en Tsujii, J., Overview of BioNLP'09 Shared Task on Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pagina's 1--9, 2009

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Sun, X. en Tsujii, J., Sequential Labeling with Latent Variables: An Exact Inference Algorithm and An Efficient Approximation, in: Proceedings of EACL 2009, pagina's 772-780, 2009

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Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. en Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, pagina's 106--107, 2009

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SÃ¦tre, R., Miwa, M., Yoshida, K. en Tsujii, J., From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pagina's 103--106, 2009

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Pyysalo, S., Ohta, T., Kim, J.-D. en Tsujii, J., Static Relations: a Piece in the Biomedical Information Extraction Puzzle, in: Proceedings of BioNLP 2009 Workshop, pagina's 1--9, 2009

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Uematsu, S., Kim, J.-D. en Tsujii, J., Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics, in: Proceedings of BioNLP 2009 Workshop, pagina's 162--170, 2009

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Sun, X., Matsuzaki, T., Okanohara, D. en Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), pagina's 1236--1242, 2009

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Sun, X., Okazaki, N. en Tsujii, J., Robust Approach to Abbreviating Terms: A Discriminative Latent Variable Model with Global Information, in: Proceedings of ACL-IJCNLP 2009, pagina's 905--913, 2009

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Sun, X., Zhang, Y., Matsuzaki, T., Tsuruoka, Y. en Tsujii, J., A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character Information, in: Proceedings of NAACL-HLT'09, pagina's 56--64, 2009

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