Ananiadou, S. - NaCTeM Publications - Aigaion 2.0

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First name(s):	S.
Last name(s):	Ananiadou

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Pyysalo, S., Ohta, T., Cho, H. -C., Sullivan, D., Mao, C., Sobral, B., Tsujii, J. and Ananiadou, S., Towards Event Extraction from Full Texts on Infectious Diseases, in: Proceedings of BioNLP 2010, ACL., pages 132--140, 2010

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Nawaz, R., Thompson, P. and Ananiadou, S., Towards Event-based Discourse Analysis of Biomedical Text (2013), in: International Journal of Computational Linguistics and Applications, 4:2(101-120)

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Ananiadou, S., Thompson, P., Kano, Y., McNaught, J., Attwood, T. K., Day, P. J. R., Keane, J., Jackson, D. and Pettifer, S., Towards Interoperability of European Language Resources (2011), in: Ariadne, 67

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Yang, K, Ji, S., Zhang, T., Xie, Q., Kuang, Z. and Ananiadou, S., Towards Interpretable Mental Health Analysis with Large Language Models, in: Proceedings of EMNLP 2023, pages 6056–6077, 2023

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Kano, Y., BjÃ¶rne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., SÃ¦tre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. and Tsujii, J., U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481)

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Kano, Y., Miwa, M., Cohen, K. B., Hunter, L., Ananiadou, S. and Tsujii, J., U-Compare: a modular NLP workflow construction and evaluation system (2011), in: IBM Journal of Research and Development, 55:3(11:1 - 11:10)

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Kano, Y., Dorado, R., McCrochon, L., Ananiadou, S. and Tsujii, J., U-Compare: An integrated language resource evaluation platform including a comprehensive UIMA resource library, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pages 428--434, 2010

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Kano, Y., Baumgartner Jr., W. A, McCrochon, L., Ananiadou, S., Cohen, K. B., Hunter, L. and Tsujii, J., U-Compare: share and compare text mining tools with UIMA (2009), in: Bioinfomatics, 25:15(1997--1998)

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Lyte, V., Jones, S., Ananiadou, S. and Kerr, L., UK Institutional Repository Search: Innovation and Discovery (2009), in: Ariadne, 61

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McEntyre, J. R., Ananiadou, S., Andrews, S., Black, W.J., Boulderstone, R., Buttery, P., Chaplin, D., Chevuru, S., Cobley, N., Coleman, L., Davey, P., Gupta, B., Haji-Gholam, L., Hawkins, C., Horne, A., Hubbard, S. J., Kim, J. -H., Lewin, I., Lyte, V., MacIntyre, R., Mansoor, S., Mason, L., McNaught, J., Newbold, E., Nobata, C., Ong, E., Pillai, S., Rebholz-Schuhmann, D., Rosie, H., Rowbotham, R., Rupp, C. J., Stoehr, P. and Vaughan, P., UKPMC: a full text article resource for the life sciences (2010), in: Nucleic Acids Research, 39:Suppl. 1(D58-D65)

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Yu, Z. and Ananiadou, S., Understanding and Mitigating Gender Bias in LLMs via Interpretable Neuron Editing, arXiv, 2025

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Yu, Z. and Ananiadou, S., Understanding Multimodal LLMs: the Mechanistic Interpretability of Llava in Visual Question Answering, arXiv, 2024

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Vasquez-Rodriguez, L., Nguyen, N. T. H., Shardlow, M. and Ananiadou, S., UoM&MMU at TSAR-2022 Shared Task: Prompt Learning for Lexical Simplification, in: Proceedings of the Workshop on Text Simplification, Accessibility, and Readability (TSAR-2022), pages 218-224, 2022

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Kontonatsios, G., Korkontzelos, I., Tsujii, J. and Ananiadou, S., Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora, in: Proceedings of the 14th Conference of the European Chapter of the Association for Computational Linguistics, volume 2: Short Papers, Association for Computational Linguistics, Gothenburg, Sweden, pages 111-116, Association for Computational Linguistics, 2014

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SpasiÄ‡, I. and Ananiadou, S., Using automatically learnt verb selectional preferences for classification of biomedical terms (2004), in: Journal of Biomedical Informatics, 37:6(483--497)

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Kontonatsios, G., Korkontzelos, I., Tsujii, J. and Ananiadou, S., Using Random Forest to recognise translation equivalents of biomedical terms across languages, in: Proceedings of the Sixth Workshop on Building and Using Comparable Corpora, Sofia, Bulgaria, pages 95-104, Association for Computational Linguistics, 2013

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O'Mara-Eves, A., Thomas, J., McNaught, J., Miwa, M. and Ananiadou, S., Using text mining for study identification in systematic reviews: A systematic review of current approaches (2015), in: Systematic Reviews, 4:1

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Alnazzawi, N., Thompson, P., Batista-Navarro, R. and Ananiadou, S., Using text mining techniques to extract phenotypic information from the PhenoCHF corpus (2015), in: BMC Medical Informatics and Decision Making, 15:Suppl. 2(S3)

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Haynes, C., Kay, N., Harrison, K., McLeod, C., Shaw, B., Leng, G., Kontonatsios, G. and Ananiadou, S., Using text mining to facilitate study identification in public health systematic reviews (2016), in: Guidelines International Network (G-I-N) conference

Zerva, C., Batista-Navarro, R., Day, P. J. R. and Ananiadou, S., Using uncertainty to link and rank evidence from biomedical literature for model curation (2017), in: Bioinformatics

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Kolluru, B., Hawizy, L., Murray-Rust, P., Tsujii, J. and Ananiadou, S., Using Workflows to Explore and Optimise Named Entity Recognition for Chemistry (2011), in: PLoS ONE, 6:5(e20181)

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MihÄƒilÄƒ, C. and Ananiadou, S., What causes a causal relation? Detecting causal triggers in biomedical scientific discourse, in: 51st Annual Meeting of the Association for Computational Linguistics Proceedings of the Student Research Workshop, Sofia, Bulgaria, pages 38-45, Association for Computational Linguistics, 2013

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Miwa, M., Pyysalo, S., Ohta, T. and Ananiadou, S., Wide coverage biomedical event extraction using multiple partially overlapping corpora (2013), in: BMC Bioinformatics, 14:175

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Hamulyak, E. N., Brockmeier, A. J., Killas, J. D., Ananiadou, S., Middeldorp, S. and Leroi, A. M., Women’s health in The BMJ: a data science history (2020), in: BMJ Open, 10(e039759)

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