Ananiadou, S. - NaCTeM Publications

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First name(s):	S.
Last name(s):	Ananiadou

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Soto, A., Zerva, C., Batista-Navarro, R. and Ananiadou, S., LitPathExplorer: A Confidence-based Visual Text Analytics Tool for Exploring Literature-Enriched Pathway Models (2017), in: Bioinformatics, 34:8(1389-1397)

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Yu, Z. and Ananiadou, S., Locate-then-Merge: Neuron-Level Parameter Fusion for Mitigating Catastrophic Forgetting in Multimodal LLMs, in: Findings of the Association for Computational Linguistics: EMNLP 2024, pages 7065–7078, 2025

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Korkontzelos, I. and Ananiadou, S., Locating Requests among Open Source Software Communication Messages, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, pages 1347-1354, European Language Resources Association (ELRA), 2014

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Bishop, J., Xie, Q. and Ananiadou, S., LongDocFACTScore: Evaluating the Factuality of Long Document Abstractive Summarisation, in: Proceedings of LREC-COLING 2024, pages 10777-10789, 2024

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Bannach-Brown, A., Przybyɫa, P., Thomas, J., Rice, A., Ananiadou, S., Liao, J. and Macleod, M. R., Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error (2019), in: Systematic Reviews, 8(23)

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Rak, R. and Ananiadou, S., Making UIMA Truly Interoperable with SPARQL, in: Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, Sofia, Bulgaria, pages 88-97, 2013

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Wang, Y., Fan, X., Chen, L., Chang, E. I-C., Ananiadou, S., Tsujii, J. and Xu, Y., Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries (2019), in: BMC Bioinformatics, 20(430)

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Alnazzawi, N., Thompson, P. and Ananiadou, S., Mapping Phenotypic Information in Heterogeneous Textual Sources to a Domain-Specific Terminological Resource (2016), in: PLOS ONE, 11:9(e0162287)

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SpasiÄ‡, I., Ananiadou, S. and Tsujii, J., MaSTerClass: a case-based reasoning system for the classification of biomedical terms (2005), in: Bioinformatics, 21:11(2748--2758)

Yang, K, Zhang, T., Kuang, Z., Xie, Q., Huang, J. and Ananiadou, S., MentaLLaMA: Interpretable Mental Health Analysis on Social Media with Large Language Models, in: Proceedings of WWW 2024, pages 4489 - 4500, 2024

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Nawaz, R., Thompson, P. and Ananiadou, S., Meta-Knowledge Annotation at the Event Level: Comparison between Abstracts and Full Papers, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), pages 24-31, 2012

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Nawaz, R., Thompson, P., McNaught, J. and Ananiadou, S., Meta-Knowledge Annotation of Bio-Events, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pages 2498--2505, 2010

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Yang, K, Liu, Z., Xie, Q., Huang, J., Zhang, T. and Ananiadou, S., MetaAligner: Towards Generalizable Multi-Objective Alignment of Language Models, in: Proceedings of the Thirty-Eighth Annual Conference on Neural Information Processing Systems (NeurIPS), 2024

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NenadiÄ‡, G., SpasiÄ‡, I. and Ananiadou, S., Mining Biomedical Abstracts: Whatâ€™s in a Term?, in: Natural Language Processing â€“ IJCNLP 2004, Springer-Verlag, 2005

Ananiadou, S., Thompson, P. and Nawaz, R., Mining events from the literature for bioinformatics applications (2013), in: ACM SIGWEB Newsletter, Autumn 2013

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Nobata, C., Dobson, P., Iqbal, S. A., Mendes, P., Tsujii, J., Kell, D. B. and Ananiadou, S., Mining Metabolites: Extracting the Yeast Metabolome from the Literature (2011), in: Metabolomics, 7:1(94-101)

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Piao, S., Ananiadou, S., Tsuruoka, Y., Sasaki, Y. and McNaught, J., Mining Opinion Polarity Relations of Citations, in: Proceedings of the 7th International Workshop on Computational Semantics, pages 366-371, 2007

NenadiÄ‡, G. and Ananiadou, S., Mining Semantically Related Terms from Biomedical Literature (2006), in: ACM Transactions on Asian Language Information Processing (TALIP), 5:1(22--43)

MihÄƒilÄƒ, C., Batista-Navarro, R., Alnazzawi, N., Kontonatsios, G., Korkontzelos, I., Rak, R., Thompson, P. and Ananiadou, S., Mining the biomedical literature, in: Healthcare Data Analytics, pages 251-308, CRC Press, 2015

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Liu, Z., Qian, L., Xie, Q., Huang, J., Yang, K and Ananiadou, S., MMAFFBen: A Multilingual and Multimodal Affective Analysis Benchmark for Evaluating LLMs and VLMs, arXiv, 2025

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Li, M., Myrman, A. F., Mu, T. and Ananiadou, S., Modelling Instance-Level Annotator Reliability for Natural Language Labelling Tasks, in: Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers), pages 2873-2883, 2019

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Sasaki, Y., Rea, B. and Ananiadou, S., Multi-topic Aspects in Clinical Text Classification, in: BIBM '07: Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine, pages 62--70, IEEE Computer Society, 2007

Peng, X., Qian, L., Wang, Y., Xiang, R., He, Y., Ren, Y., Jiang, M., Zhao, J., He, H., Han, Y., Feng, Y., Jiang, Y., Cao, Y., Li, H., Yu, Y., Wang, X., Gao, P., Lin, S., Wang, K., Yang, S., Zhao, Y., Liu, Z., Lu, P., Huang, J., Wang, S., Papadopoulos, T., Giannouris, P., Soufleri, E., Chen, N., Xiong, G., Deng, Z., Zhao, Y., Lin, M., Qiu, M., Smith, K., Cohan, A., Liu, X. -Y., Lopez-Lira, A., Chen, X., Tsujii, J., Nie, J., Ananiadou, S. and Xie, Q., MultiFinBen: A Multilingual, Multimodal, and Difficulty-Aware Benchmark for Financial LLM Evaluation, arXiv, 2025

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Przybyɫa, P., Nguyen, N. T. H., Shardlow, M., Kontonatsios, G. and Ananiadou, S., NaCTeM at SemEval-2016 Task 1: Inferring sentence-level semantic similarity from an ensemble of complementary lexical and sentence-level features, in: Proceedings of the 10th International Workshop on Semantic Evaluation (SemEval 2016), pages 614-620, 2016

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Batista-Navarro, R., Rak, R. and Ananiadou, S., NaCTeM CTD Web Services, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, pages 85-89, 2013

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