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Bannach-Brown, A., Przybyɫa, P., Thomas, J., Rice, A., Ananiadou, S., Liao, J. und Macleod, M. R., Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error (2019), in: Systematic Reviews, 8(23)

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Rak, R. und Ananiadou, S., Making UIMA Truly Interoperable with SPARQL, in: Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, Sofia, Bulgaria, Seiten 88-97, 2013

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Wang, Y., Fan, X., Chen, L., Chang, E. I-C., Ananiadou, S., Tsujii, J. und Xu, Y., Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries (2019), in: BMC Bioinformatics, 20(430)

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Alnazzawi, N., Thompson, P. und Ananiadou, S., Mapping Phenotypic Information in Heterogeneous Textual Sources to a Domain-Specific Terminological Resource (2016), in: PLOS ONE, 11:9(e0162287)

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SpasiÄ‡, I., Ananiadou, S. und Tsujii, J., MaSTerClass: a case-based reasoning system for the classification of biomedical terms (2005), in: Bioinformatics, 21:11(2748--2758)

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Kazama, J. und Tsujii, J., Maximum Entropy Models with Inequality Constraints: A case study on text categorization (2005), in: Machine Learning, 60:1-3(169-194)

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Ohta, T., Matsuzaki, T., Okazaki, N., Miwa, M., SÃ¦tre, R., Pyysalo, S. und Tsujii, J., Medie and Info-pubmed: 2010 update (2010), in: BMC Bioinformatics, 11:Suppl 5(P7)

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Yang, K, Zhang, T., Kuang, Z., Xie, Q., Huang, J. und Ananiadou, S., MentaLLaMA: Interpretable Mental Health Analysis on Social Media with Large Language Models, in: Proceedings of WWW 2024, Seiten 4489 - 4500, 2024

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Nawaz, R., Thompson, P. und Ananiadou, S., Meta-Knowledge Annotation at the Event Level: Comparison between Abstracts and Full Papers, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), Seiten 24-31, 2012

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Nawaz, R., Thompson, P., McNaught, J. und Ananiadou, S., Meta-Knowledge Annotation of Bio-Events, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), Seiten 2498--2505, 2010

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Yang, K, Liu, Z., Xie, Q., Huang, J., Zhang, T. und Ananiadou, S., MetaAligner: Towards Generalizable Multi-Objective Alignment of Language Models, in: Proceedings of the Thirty-Eighth Annual Conference on Neural Information Processing Systems (NeurIPS), 2024

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NenadiÄ‡, G., SpasiÄ‡, I. und Ananiadou, S., Mining Biomedical Abstracts: Whatâ€™s in a Term?, in: Natural Language Processing â€“ IJCNLP 2004, Springer-Verlag, 2005

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Ananiadou, S., Thompson, P. und Nawaz, R., Mining events from the literature for bioinformatics applications (2013), in: ACM SIGWEB Newsletter, Autumn 2013

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Nobata, C., Dobson, P., Iqbal, S. A., Mendes, P., Tsujii, J., Kell, D. B. und Ananiadou, S., Mining Metabolites: Extracting the Yeast Metabolome from the Literature (2011), in: Metabolomics, 7:1(94-101)

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Piao, S., Ananiadou, S., Tsuruoka, Y., Sasaki, Y. und McNaught, J., Mining Opinion Polarity Relations of Citations, in: Proceedings of the 7th International Workshop on Computational Semantics, Seiten 366-371, 2007

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Rice, S., NenadiÄ‡, G. und Stapley, B., Mining protein function from text using term-based support vector machines (2005), in: BMC Bioinformatics, 6:Suppl 1(S22)

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NenadiÄ‡, G. und Ananiadou, S., Mining Semantically Related Terms from Biomedical Literature (2006), in: ACM Transactions on Asian Language Information Processing (TALIP), 5:1(22--43)

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MihÄƒilÄƒ, C., Batista-Navarro, R., Alnazzawi, N., Kontonatsios, G., Korkontzelos, I., Rak, R., Thompson, P. und Ananiadou, S., Mining the biomedical literature, in: Healthcare Data Analytics, Seiten 251-308, CRC Press, 2015

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Liu, Z., Qian, L., Xie, Q., Huang, J., Yang, K und Ananiadou, S., MMAFFBen: A Multilingual and Multimodal Affective Analysis Benchmark for Evaluating LLMs and VLMs, arXiv, 2025

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Li, M., Myrman, A. F., Mu, T. und Ananiadou, S., Modelling Instance-Level Annotator Reliability for Natural Language Labelling Tasks, in: Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers), Seiten 2873-2883, 2019

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Arase, Y. und Tsujii, J., Monolingual Phrase Alignment on Parse Forests, in: Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, Seiten 1-11, 2017

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Araki, N., Yoshida, K., Tsuruoka, Y. und Tsujii, J., Move Prediction in Go with the Maximum Entropy Method, in: 2007 IEEE Symposium on Computational Intelligence and Games, Seiten 189-195, 2007

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Sasaki, Y., Rea, B. und Ananiadou, S., Multi-topic Aspects in Clinical Text Classification, in: BIBM '07: Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine, Seiten 62--70, IEEE Computer Society, 2007

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Hatori, J., Murakami, A. und Tsujii, J., Multi-Topical Discussion Summarization using Structured Lexical Chains and Cue Words, in: Proceedings of CICLing 2011, Lecture Notes in Computer Science, Seiten 313-327, Springer, 2011

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Peng, X., Qian, L., Wang, Y., Xiang, R., He, Y., Ren, Y., Jiang, M., Zhao, J., He, H., Han, Y., Feng, Y., Jiang, Y., Cao, Y., Li, H., Yu, Y., Wang, X., Gao, P., Lin, S., Wang, K., Yang, S., Zhao, Y., Liu, Z., Lu, P., Huang, J., Wang, S., Papadopoulos, T., Giannouris, P., Soufleri, E., Chen, N., Xiong, G., Deng, Z., Zhao, Y., Lin, M., Qiu, M., Smith, K., Cohan, A., Liu, X. -Y., Lopez-Lira, A., Chen, X., Tsujii, J., Nie, J., Ananiadou, S. und Xie, Q., MultiFinBen: A Multilingual, Multimodal, and Difficulty-Aware Benchmark for Financial LLM Evaluation, arXiv, 2025

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