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Yang, K, Zhang, T., Kuang, Z., Xie, Q., Huang, J. und Ananiadou, S., MentaLLaMA: Interpretable Mental Health Analysis on Social Media with Large Language Models, in: Proceedings of WWW 2024, Seiten 4489 - 4500, 2024

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Nawaz, R., Thompson, P. und Ananiadou, S., Meta-Knowledge Annotation at the Event Level: Comparison between Abstracts and Full Papers, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), Seiten 24-31, 2012

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Nawaz, R., Thompson, P., McNaught, J. und Ananiadou, S., Meta-Knowledge Annotation of Bio-Events, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), Seiten 2498--2505, 2010

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Yang, K, Liu, Z., Xie, Q., Huang, J., Zhang, T. und Ananiadou, S., MetaAligner: Towards Generalizable Multi-Objective Alignment of Language Models, in: Proceedings of the Thirty-Eighth Annual Conference on Neural Information Processing Systems (NeurIPS), 2024

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NenadiÄ‡, G., SpasiÄ‡, I. und Ananiadou, S., Mining Biomedical Abstracts: Whatâ€™s in a Term?, in: Natural Language Processing â€“ IJCNLP 2004, Springer-Verlag, 2005

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Ananiadou, S., Thompson, P. und Nawaz, R., Mining events from the literature for bioinformatics applications (2013), in: ACM SIGWEB Newsletter, Autumn 2013

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Nobata, C., Dobson, P., Iqbal, S. A., Mendes, P., Tsujii, J., Kell, D. B. und Ananiadou, S., Mining Metabolites: Extracting the Yeast Metabolome from the Literature (2011), in: Metabolomics, 7:1(94-101)

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Piao, S., Ananiadou, S., Tsuruoka, Y., Sasaki, Y. und McNaught, J., Mining Opinion Polarity Relations of Citations, in: Proceedings of the 7th International Workshop on Computational Semantics, Seiten 366-371, 2007

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Rice, S., NenadiÄ‡, G. und Stapley, B., Mining protein function from text using term-based support vector machines (2005), in: BMC Bioinformatics, 6:Suppl 1(S22)

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NenadiÄ‡, G. und Ananiadou, S., Mining Semantically Related Terms from Biomedical Literature (2006), in: ACM Transactions on Asian Language Information Processing (TALIP), 5:1(22--43)

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MihÄƒilÄƒ, C., Batista-Navarro, R., Alnazzawi, N., Kontonatsios, G., Korkontzelos, I., Rak, R., Thompson, P. und Ananiadou, S., Mining the biomedical literature, in: Healthcare Data Analytics, Seiten 251-308, CRC Press, 2015

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Liu, Z., Qian, L., Xie, Q., Huang, J., Yang, K und Ananiadou, S., MMAFFBen: A Multilingual and Multimodal Affective Analysis Benchmark for Evaluating LLMs and VLMs, arXiv, 2025

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Li, M., Myrman, A. F., Mu, T. und Ananiadou, S., Modelling Instance-Level Annotator Reliability for Natural Language Labelling Tasks, in: Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers), Seiten 2873-2883, 2019

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Arase, Y. und Tsujii, J., Monolingual Phrase Alignment on Parse Forests, in: Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, Seiten 1-11, 2017

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Araki, N., Yoshida, K., Tsuruoka, Y. und Tsujii, J., Move Prediction in Go with the Maximum Entropy Method, in: 2007 IEEE Symposium on Computational Intelligence and Games, Seiten 189-195, 2007

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Sasaki, Y., Rea, B. und Ananiadou, S., Multi-topic Aspects in Clinical Text Classification, in: BIBM '07: Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine, Seiten 62--70, IEEE Computer Society, 2007

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Hatori, J., Murakami, A. und Tsujii, J., Multi-Topical Discussion Summarization using Structured Lexical Chains and Cue Words, in: Proceedings of CICLing 2011, Lecture Notes in Computer Science, Seiten 313-327, Springer, 2011

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Peng, X., Qian, L., Wang, Y., Xiang, R., He, Y., Ren, Y., Jiang, M., Zhao, J., He, H., Han, Y., Feng, Y., Jiang, Y., Cao, Y., Li, H., Yu, Y., Wang, X., Gao, P., Lin, S., Wang, K., Yang, S., Zhao, Y., Liu, Z., Lu, P., Huang, J., Wang, S., Papadopoulos, T., Giannouris, P., Soufleri, E., Chen, N., Xiong, G., Deng, Z., Zhao, Y., Lin, M., Qiu, M., Smith, K., Cohan, A., Liu, X. -Y., Lopez-Lira, A., Chen, X., Tsujii, J., Nie, J., Ananiadou, S. und Xie, Q., MultiFinBen: A Multilingual, Multimodal, and Difficulty-Aware Benchmark for Financial LLM Evaluation, arXiv, 2025

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Przybyɫa, P., Nguyen, N. T. H., Shardlow, M., Kontonatsios, G. und Ananiadou, S., NaCTeM at SemEval-2016 Task 1: Inferring sentence-level semantic similarity from an ensemble of complementary lexical and sentence-level features, in: Proceedings of the 10th International Workshop on Semantic Evaluation (SemEval 2016), Seiten 614-620, 2016

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Batista-Navarro, R., Rak, R. und Ananiadou, S., NaCTeM CTD Web Services, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 85-89, 2013

Miwa, M. und Ananiadou, S., NaCTeM EventMine for BioNLP 2013 CG and PC tasks, in: Proceedings of BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, Seiten 94-98, Association for Computational Linguistics, 2013

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Wang, X., Rak, R., Restificar, A., Nobata, C., Rupp, C. J., Batista-Navarro, R., Nawaz, R. und Ananiadou, S., NaCTeM Systems for BioCreative III PPI Tasks, in: Proceedings of the BioCreative III Workshop, Seiten 142-147, 2010

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Rak, R., Batista-Navarro, R., Rowley, A., Miwa, M., Carter, J. und Ananiadou, S., NaCTeMâ€™s BioC Modules and Resources for BioCreative IV, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 61-67, 2013

Ananiadou, S., Sullivan, D., Black, W.J., Levow, G., Gillespie, J., Mao, C., Pyysalo, S., Kolluru, B., Tsujii, J. und Sobral, B., Named Entity Recognition for Bacterial Type IV Secretion Systems (2011), in: PLoS ONE, 6:3(e14780)

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Trieu, H-L., Miwa, M. und Ananiadou, S., Named Entity Recognition for Cancer Immunology Research Using Distant Supervision, in: Proceedings of BioNLP 2022, Seiten 171-177, 2022

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