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Thompson, P., Kano, Y., McNaught, J., Pettifer, S., Attwood, T. K., Keane, J. en Ananiadou, S., Promoting Interoperability of Resources in META-SHARE, in: Proceedings of the IJCNLP Workshop on Language Resources, Technology and Services in the Sharing Paradigm (LRTS), pagina's 50-58, 2011
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Korkontzelos, I., Mu, T., Restificar, A. en Ananiadou, S., Text mining for efficient search and assisted creation of clinical trials, in: Proceedings of the ACM Fourth International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO 2011), 2011
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Pyysalo, S., Sætre, R., Tsujii, J. en Salakoski, T., Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), pagina's 149--152, 2008
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Wang, Y., Kim, J.-D., Sætre, R., Pyysalo, S., Ohta, T. en Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), pagina's 103--108, 2009
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Pyysalo, S., Ohta, T. en Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
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Ohta, T., Pyysalo, S., Miwa, M. en Tsujii, J., Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
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Ohta, T., Pyysalo, S., Miwa, M., Kim, J.-D. en Tsujii, J., Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, pagina's 19--27, Association for Computational Linguistics, 2010
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Ohta, T., Pyysalo, S., Kim, J.-D. en Tsujii, J., A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928)
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Nguyen, N. T. H., Kim, J.-D. en Tsujii, J., Overview of BioNLP 2011 Protein Coreference Shared Task, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 74--82, Association for Computational Linguistics, 2011
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Andrade, D., Matsuzaki, T. en Tsujii, J., Learning the Optimal Use of Dependency-parsing Information for Finding Translations with Comparable Corpora, in: Proceedings of the 4th Workshop on Building and Using Comparable Corpora: Comparable Corpora and the Web, pagina's 10--18, Association for Computational Linguistics, 2011
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Iwasawa, S., Hanaoka, H., Matsuzaki, T., Miyao, Y. en Tsujii, J., A Collaborative Annotation between Human Annotators and a Statistical Parser, in: Proceedings of the 5th Linguistic Annotation Workshop, pagina's 56--64, Association for Computational Linguistics, 2011
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Usami, Y., Cho, H. -C., Okazaki, N. en Tsujii, J., Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition, in: Proceedings of the BioNLP 2011 Workshop, pagina's 65--73, Association for Computational Linguistics, 2011
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Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. en Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, pagina's 214--221, IEEE Computer Society, 2010
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Andrade, D., Matsuzaki, T. en Tsujii, J., Effective use of dependency structure for bilingual lexicon creation, in: Proceedings of the 12th international conference on Computational linguistics and intelligent text processing (CICLing'11) - Volume Part II, Tokyo, Japan, pagina's 80--92, Springer-Verlag, 2011
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Stenetorp, P., Topić, G., Pyysalo, S., Ohta, T., Kim, J.-D. en Tsujii, J., BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 112--120, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T. en Tsujii, J., Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011, in: Proceedings of theBioNLP Shared Task 2011 Workshop, pagina's 83--88, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. en Ananiadou, S., Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 26--35, Association for Computational Linguistics, 2011
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Ohta, T., Pyysalo, S. en Tsujii, J., Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 16--25, Association for Computational Linguistics, 2011
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Kim, J.-D., Pyysalo, S., Ohta, T., Bossy, R., Nguyen, N. T. H. en Tsujii, J., Overview of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 1--6, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T., Miwa, M. en Tsujii, J., Towards Exhaustive Event Extraction for Protein Modifications, in: Proceedings of the BioNLP 2011 Workshop, pagina's 114--123, Association for Computational Linguistics, 2011
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Ohta, T., Pyysalo, S. en Tsujii, J., From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, pagina's 105--113, Association for Computational Linguistics, 2011
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Stenetorp, P., Pyysalo, S. en Tsujii, J., SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation, in: Proceedings of the BioNLP 2011 Workshop, pagina's 136-145, Association for Computational Linguistics, 2011
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