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Mu, T., Miwa, M., Tsujii, J. en Ananiadou, S., Discovering Robust Embeddings in (Dis)Similarity Space for High-Dimensional Lingustic Features (2012), in: Computatational Intelligence

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Pyysalo, S., Ohta, T., Miwa, M., Cho, H. -C., Tsujii, J. en Ananiadou, S., Event extraction across multiple levels of biological organization (2012), in: Bioinformatics, 28:18(i575-i581)

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Miwa, M., Thompson, P., McNaught, J., Kell, D. B. en Ananiadou, S., Extracting semantically enriched events from biomedical literature (2012), in: BMC Bioinformatics, 13(108)

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Nawaz, R., Thompson, P. en Ananiadou, S., Identification of Manner in Bio-Events, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pagina's 3505-3510, 2012

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Nawaz, R., Thompson, P. en Ananiadou, S., Meta-Knowledge Annotation at the Event Level: Comparison between Abstracts and Full Papers, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), pagina's 24-31, 2012

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Pyysalo, S., Stenetorp, P., Ohta, T., Kim, J.-D. en Ananiadou, S., New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, pagina's 100-108, 2012

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Ohta, T., Pyysalo, S., Tsujii, J. en Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pagina's 27-36, 2012

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. en Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Mu, T., Goulermas, J. Y, Tsujii, J. en Ananiadou, S., Proximity-based Frameworks for Generating Embeddings from Multi-Output Data (2012), in: IEEE Transactions on Pattern Analysis and Machine Intelligence

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BjÃ¶rne, J., Van Landeghem, S., Pyysalo, S., Ohta, T., Ginter, F., Van de Peer, Y., Ananiadou, S. en Salakoski, T., PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations, in: Proceedings of BioNLP 2012, pagina's 82-90, 2012

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Selected articles from the BioNLP Shared Task 2011, 2012

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Ananiadou, S., Ohta, T. en Rutter, M., Text Mining supporting Search for Knowledge Discovery in Diabetes (2012), in: Current Cardiovascular Risk Reports

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Ananiadou, S., McNaught, J. en Thompson, P., The English Language in the Digital Age, in: White Paper Series, Springer, 2012

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MihÄƒilÄƒ, C. en Batista-Navarro, R., What's in a Name? Entity Type Variation across Two Biomedical Subdomains, in: Proceedings of the Student Research Workshop at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pagina's 38-45, Association for Computational Linguistics, 2012

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Iwasawa, S., Hanaoka, H., Matsuzaki, T., Miyao, Y. en Tsujii, J., A Collaborative Annotation between Human Annotators and a Statistical Parser, in: Proceedings of the 5th Linguistic Annotation Workshop, pagina's 56--64, Association for Computational Linguistics, 2011

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Batista-Navarro, R. en Ananiadou, S., Adapting the Cluster Ranking Supervised Model to Resolve Coreferences in the Drug Literature, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

Kontonatsios, G., Korkontzelos, I., Kolluru, B. en Ananiadou, S., Adding Text Mining Workflows as Web Services to the BioCatalogue, in: Proceedings of the 4th International Workshop on Semantic Web Aplications and Tools for the Life Sciences (SWAT4LS)., 2011

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Kocbek, S., SÃ¦tre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. en Tsujii, J., AGRA: Analysis of Gene Ranking Algorithms (2011), in: Bioinformatics, 27:8(1185-1186)

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Stenetorp, P., Pyysalo, S., Ananiadou, S. en Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)

Soldatova, L. N., Kolluru, B., King, R. D., Qi, D. en Ananiadou, S., An ontology-based disambiguation of terms, in: Proceedings of the Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing, 2011

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Kocbek, S., SÃ¦tre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. en Tsujii, J., Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from Pubmed publications, in: Proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2011

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Pyysalo, S., Ohta, T. en Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Thomas, J., McNaught, J. en Ananiadou, S., Applications of text mining within systematic reviews (2011), in: Research Synthesis Methods, 2:1(1-14)

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Usami, Y., Cho, H. -C., Okazaki, N. en Tsujii, J., Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition, in: Proceedings of the BioNLP 2011 Workshop, pagina's 65--73, Association for Computational Linguistics, 2011

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Wang, X., McKendrick, I., Barrett, I., Dix, I., French, T., Tsujii, J. en Ananiadou, S., Automatic Extraction of Angiogenesis Bio-Process from Text (2011), in: Bioinformatics, 27:19(2730-2737)

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