Publication list - NaCTeM Publications

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Raitano, G., Benfenati, E., Ananiadou, S., Nguyen, N. T. H., Do, Q. T., Rat, P. and Sousselier, L., Role of in silico tools and text mining in the safety assessment of selected plant coumarins (2017), in: Toxicology Letters, 280:Supplement 1(S96)

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Rak, R. and Ananiadou, S., Making UIMA Truly Interoperable with SPARQL, in: Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, Sofia, Bulgaria, pages 88-97, 2013

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Rak, R., Batista-Navarro, R., Carter, J., Rowley, A. and Ananiadou, S., Processing Biological Literature with Customisable Web Services Supporting Interoperable Formats (2014), in: Database: The Journal of Biological Databases and Curation

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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. and Ananiadou, S., Text Mining-assisted Biocuration Workflows in Argo (2014), in: Database: The Journal of Biological Databases and Curation

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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. and Ananiadou, S., Customisable Curation Workflows in Argo, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, pages 270-278, 2013

Rak, R., Batista-Navarro, R., Rowley, A., Miwa, M., Carter, J. and Ananiadou, S., NaCTeMâ€™s BioC Modules and Resources for BioCreative IV, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, pages 61-67, 2013

Rak, R., Kolluru, B. and Ananiadou, S., Building trainable taggers in a web-based, UIMA-supported NLP workbench, in: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics (ACL 2012), pages 121-126, 2012

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Rak, R., Rowley, A. and Ananiadou, S., Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pages 2971-2976, 2012

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Rak, R., Rowley, A., Black, W.J. and Ananiadou, S., Argo: an integrative, interactive, text mining-based workbench supporting curation (2012), in: Database: The Journal of Biological Databases and Curation, 2012

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Rak, R., Rowley, A., Carter, J. and Ananiadou, S., Development and Analysis of NLP Pipelines in Argo, in: Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics: System Demonstrations, Association for Computational Linguistics, Sofia, Bulgaria, pages 115-120, 2013

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Rak, R., Rowley, A., Carter, J., Batista-Navarro, R. and Ananiadou, S., Interoperability and Customisation of Annotation Schemata in Argo, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, pages 3837-3842, European Language Resources Association (ELRA), 2014

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Rea, B. and Ananiadou, S., Text Mining Services to Support E-Research, in: UK e-Science All Hands Meeting, 2007

Rebholz-Schuhmann, D., Pezik, P., Lee, V., Kim, J-J., del Gratta, R., Sasaki, Y., McNaught, J., Montemagni, S., Monachini, M., Calzolari, N. and Ananiadou, S., BioLexicon: Towards a Reference Terminological Resource in the Biomedical Domain, in: Proceedings of the of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB-2008), 2008

Rehm, G., Uszkoreit, H., Ananiadou, S., Bel, N., Bieleviciene, A., Borin, L., Branco, A., Budin, G., Calzolari, N., Daelemans, W., Garabik, R., Grobelnik, M., Garcia-Mateo, C., Van Genabith, J., Hajic, J., Hernaez, I., Judge, J., Koeva, S., Krek, S., Krstev, C., Linden, K., Magnini, B., Mariani, J., McNaught, J., Melero, M., Monachini, M., Moreno, A., Odijk, J., Ogrodniczuk, M., Pezik, P., Piperidis, S., Przepiorkowski, A., Rognvaldsson, E., Rosner, M., Pedersen, B., Skadina, I., De Smedt, K., Tadic, M., Thompson, P., Tufis, D., Varadi, T., Vasiljevs, A., Vider, K. and Zabarskaite, J., The strategic impact of META-NET on the regional, national and international level (2016), in: Language Resources and Evaluation, 50:2(351-374)

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Rehm, G., Uszkoreit, H., Ananiadou, S., Bel, N., Bieleviciene, A., Borin, L., Branco, A., Budin, G., Calzolari, N., Daelemans, W., Garabik, R., Grobelnik, M., Garcia-Mateo, C., Van Genabith, J., Hajic, J., Hernaez, I., Judge, J., Koeva, S., Krek, S., Krstev, C., Linden, K., Magnini, B., Mariani, J., McNaught, J., Melero, M., Monachini, M., Moreno, A., Odijk, J., Ogrodniczuk, M., Pezik, P., Piperidis, S., Przepiorkowski, A., Rognvaldsson, E., Rosner, M., Pedersen, B., Skadina, I., De Smedt, K., Tadic, M., Thompson, P., Tufis, D., Varadi, T., Vasiljevs, A., Vider, K. and Zabarskaite, J., The Strategic Impact of META-NET on the Regional, National and International Level, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), pages 1517-1524, European Language Resources Association, 2014

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Restificar, A., Korkontzelos, I. and Ananiadou, S., A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data (2013), in: BMC Medical Informatics and Decision Making, 13:Suppl 1(S6)

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Rice, S., NenadiÄ‡, G. and Stapley, B., Mining protein function from text using term-based support vector machines (2005), in: BMC Bioinformatics, 6:Suppl 1(S22)

Riedel, S., SÃ¦tre, R., Chun, H.-W., Takagi, T. and Tsujii, J., Bio-Molecular Event Extraction with Markov Logic (2011), in: Computational Intelligence, 27:4(558-582)

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Rosner, M., Attard, A., Thompson, P., Gatt, A. and Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Human Language Technology Challenges for Computer Science and Linguistics, pages 315-326, Springer, 2014

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Rosner, M., Attard, A., Thompson, P., Gatt, A. and Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Proceedings of the 5th Language & Technology Conference (LTC'2011), 2011

Rupp, C. J., Thompson, P., Black, W.J., McNaught, J. and Ananiadou, S., A Specialised Verb Lexicon as the Basis of Fact Extraction in the Biomedical Domain, in: Proceedings of Interdisciplinary Workshop on Verbs: The Identification and Representation of Verb Features (Verb 2010), 2010

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Sagae, K., Miyao, Y. and Tsujii, J., HPSG parsing with shallow dependency constraints, in: Proceedings of the 44th Meeting of the Association for Computational Linguistics, pages 624--631, 2007

Sagae, K. and Tsujii, J., Dependency parsing and domain adaptation with LR models and parser ensembles, in: Proceedings of the CoNLL 2007 Shared Task in the Joint Conferences on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL'07 shared task), pages 1044-1050, 2007

Saha, T and Ananiadou, S., Emotion-aware and Intent-controlled Empathetic Response Generation using Hierarchical Transformer Network, in: Proceedings of IJCNN at 2022 IEEE World Congress on Computational Intelligence, pages 1-8, 2022

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Sahu, S. K., Christopoulou, F., Miwa, M. and Ananiadou, S., Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network, in: Proceedings of ACL 2019, pages 4309-4316, 2019

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