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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. und Tsujii, J., Improving the Inter-corpora Compatibility for Protein Annotations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(901-916)

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. und Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), Seiten 103--108, 2009

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S. und Tsujii, J., Investigating heterogeneous protein annotations toward cross-corpora utilization (2009), in: BMC Bioinformatics, 10(403)

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Williams, J., Matragkas, N., Kolovos, D. S., Korkontzelos, I., Ananiadou, S. und Paige, R. F., Software Analytics for MDE Communities, in: Proceedings of the Open Source Software for Model Driven Engineering Workshop (OSS4MDEâ€™14), 2014

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Wu, X., Matsuzaki, T., Okazaki, N., Miyao, Y. und Tsujii, J., The UOT System: Improve String-to-Tree Translation Using Head-Driven Phrase Structure Grammar and Predicate-Argument Structures, in: Proceedings on the International Workshop on Spoken Language Translation (IWSLT), Seiten 99--106, 2009

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Wu, X., Matsuzaki, T. und Tsujii, J., Effective Use of Function Words for Rule Generalization in Forest-Based Translation, in: Proceedings of ACL-HLT 2011, Seiten 22-31, 2011

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Wu, X., Matsuzaki, T. und Tsujii, J., Improve Syntax-based Translation Using Deep Syntactic Structures (2010), in: Machine Translation (Special Issue : Pushing the frontiers of SMT)

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Wu, X., Matsuzaki, T. und Tsujii, J., Fine-grained Tree-to-String Translation Rule Extraction, in: Proceedings of The 48th Annual Meeting of the Association for Computational Linguistics (ACL 2010), Seiten 325--334, 2010

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Wu, X., Okazaki, N. und Tsujii, J., Semi-Supervised Lexicon Mining from Parenthetical Expressions in Monolingual Web Pages, in: Proceedings of HLT-NAACL 2009, Seiten 424--432, 2009

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Xiao, M., Jiang, Z., Qian, L., Chen, Z., He, Y., Xu, Y., Jiang, Y., Li, D., Weng, R. -L., Peng, M., Huang, J., Ananiadou, S. und Xie, Q., Retrieval-augmented Large Language Models for Financial Time Series Forecasting, arXiv, 2025

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Xie, Q., Bishop, J., Tiwari, P. und Ananiadou, S., Pre-trained language models with domain knowledge for biomedical extractive summarization (2022), in: Knowledge-Based Systems, 252(109460)

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Xie, Q., Han, W., Chen, Z., Xiang, R., Zhang, X., He, Y., Xiao, M., Li, D., Dai, Y., Feng, D., Xu, Y., Kang, H., Kuang, Z., Yuan, C., Yang, K, Luo, Z., Zhang, T., Liu, Z., Xiong, G., Deng, Z., Jiang, Y., Yao, Z., Li, H., Yu, Y., Lopez-Lira, A., Wang, B., Lai, Y., Wang, H., Peng, M., Ananiadou, S. und Huang, J., FinBen: An Holistic Financial Benchmark for Large Language Models, in: Proceedings of the Thirty-Eighth Annual Conference on Neural Information Processing Systems (NeurIPS), 2024

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Xie, Q., Huang, J., Du, P., Peng, M. und Nie., J. -Y., Inductive Topic Variational Graph Auto-Encoder for Text Classification, in: Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2021

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Xie, Q., Huang, J., Li, D., Chen, Z., Xiang, R., Xiao, M., Yu, Y., Somasundaram, V., Yang, K, Yuan, C., Luo, Z., Liu, Z., He, Y., Jiang, Y., Li, H., Feng, D., Liu, X. -Y., Wang, B., Wang, H., Lai, Y., Suchow, J., Lopez-Lira, A., Peng, M. und Ananiadou, S., FinNLP-AgentScen-2024 Shared Task: Financial Challenges in Large Language Models - FinLLMs, in: Proceedings of the Eighth Financial Technology and Natural Language Processing and the 1st Agent AI for Scenario Planning, Seiten 119- 126, 2024

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Xie, Q., Huang, J., Saha, T und Ananiadou, S., GRETEL: Graph Contrastive Topic Enhanced Language Model for Long Document Extractive Summarization, in: Proceedings of COLING, Seiten 6259–6269, 2022

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Xie, Q., Li, D., Xiao, M., Jiang, Y., Xiang, R., Zhang, X., Chen, Z., He, Y., Han, W., Yang, Y., Chen, S., Zhang, Y., Shen, L., Kim, D., Liu, Z., Luo, Z., Yu, Y., Cao, Y., Deng, Z., Yao, Z., Li, H., Feng, D., Dai, Y., Somasundaram, V., Lu, P., Zhao, Y., Long, Y., Xiong, G., Smith, K., Yu, H., Lai, Y., Peng, M., Nie, J., Suchow, J., Liu, X. -Y., Wang, B., Lopez-Lira, A., Huang, J. und Ananiadou, S., Open-FinLLMs: Open Multimodal Large Language Models for Financial Applications, arXiv, 2024

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Xie, Q., Luo, Z. und Ananiadou, S., A Survey for Biomedical Text Summarization: From Pre-trained to Large Language Models, arXiv, 2023

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Xie, Q., Tiwari, P. und Ananiadou, S., Knowledge-enhanced Graph Topic Transformer for Explainable Biomedical Text Summarization (2023), in: IEEE Journal of Biomedical and Health Informatics

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Xiong, G., Deng, Z., Wang, K., Cao, Y., Li, H., Yu, Y., Peng, X., Lin, M., Smith, K., Liu, X. -Y., Huang, J., Ananiadou, S. und Xie, Q., FLAG-Trader: Fusion LLM-Agent with Gradient-based Reinforcement Learning for Financial Trading, in: Findings of the Association for Computational Linguistics: ACL 2025, In Press

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Xu, B., Liu, Z. und Ananiadou, S., Disentangled VAD Representations via a Variational Framework for Political Stance Detection, arXiv, 2025

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Xu, Y., Chen, L., Wei, J., Ananiadou, S., Fan, Y., Qian, Y., Chang, E. I-C. und Tsujii, J., Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary (2015), in: BMC Bioinformatics, 16(149)

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Xu, Y., Hua, J., Ni, Z., Chen, Q., Fan, Y., Ananiadou, S., Chang, E. I-C. und Tsujii, J., Anatomical entity recognition with a hierarchical framework augmented by external resources (2014), in: PLOS ONE, 9:10(e108396)

[DOI]
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Yakushiji, A., Miyao, Y., Ohta, T., Tateisi, Y. und Tsujii, J., Automatic Construction of Predicate-argument Structure Patterns for Biomedical Information Extraction, in: Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing (EMNLP), Seiten 284--292, 2006

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Yakushiji, A., Miyao, Y., Tateisi, Y. und Tsujii, J., Biomedical Information Extraction with Predicate-Argument Structure Patterns, in: Proceedings of the First International Symposium on Semantic Mining in Biomedicine (SMBM), Seiten 60--69, 2005

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Yamada, T., Kamata, R., Ishinohachi, K., Shojima, N., Ananiadou, S., Noma, H., Yamauchi, T. und Kadowaki, T., Biosimilar Versus Originator Insulins: Systematic review and meta-analysis (2018), in: Diabetes, Obesity and Metabolism

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