Ananiadou, S. - NaCTeM Publications

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First name(s):	S.
Last name(s):	Ananiadou

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Nguyen, N. T. H., Gabud, R. and Ananiadou, S., COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature (2019), in: Biodiversity Data Journal, 7(e29626)

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Nguyen, N. T. H., Miwa, M. and Ananiadou, S., Span-based Named Entity Recognition by Generating and Compressing Information, in: Proceedings of EACL 2023, pages 1984–1996, 2023

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Nguyen, N. T. H., Soto, A., Kontonatsios, G., Batista-Navarro, R. and Ananiadou, S., Constructing a Biodiversity Terminological Inventory (2017), in: PLOS ONE, 12:4(e0175277)

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Nobata, C., Cotter, P., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Kleio: a knowledge-enriched information retrieval system for biology, in: Proceedings of the 31st annual international ACM SIGIR conference on Research and development in information retrieval, Singapore, Singapore, pages 787--788, ACM, 2008

Nobata, C., Dobson, P., Iqbal, S. A., Mendes, P., Tsujii, J., Kell, D. B. and Ananiadou, S., Mining Metabolites: Extracting the Yeast Metabolome from the Literature (2011), in: Metabolomics, 7:1(94-101)

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Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C. J., Tsujii, J. and Ananiadou, S., Semantic Search on Digital Document Repositories based on Text Mining Results, in: International Conferences on Digital Libraries and the Semantic Web 2009 (ICSD2009), pages 34--48, 2009

O'Mara-Eves, A., Thomas, J., McNaught, J., Miwa, M. and Ananiadou, S., Using text mining for study identification in systematic reviews: A systematic review of current approaches (2015), in: Systematic Reviews, 4:1

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Odbal, G. Z. and Ananiadou, S., Examining and mitigating gender bias in text emotion detection task (2022), in: Neurocomputing, 493(422-434)

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Ohta, T., Pyysalo, S., Ananiadou, S. and Tsujii, J., Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Ohta, T., Pyysalo, S., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P. and Ananiadou, S., Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, pages 67-75, Association for Computational Linguistics, 2013

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Ohta, T., Pyysalo, S., Tsujii, J. and Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pages 27-36, 2012

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Okazaki, N. and Ananiadou, S., Clustering Acronyms in Biomedical Text for Disambiguation, in: Proceedings of Fifth International conference on Language Resources and Evaluation (LREC 2006), pages 959-962, 2006

Okazaki, N. and Ananiadou, S., Building an Abbreviation Dictionary using a Term Recognition Approach (2006), in: Bioinformatics, 22:24(3089-3095)

Okazaki, N., Ananiadou, S. and Tsujii, J., Building a High Quality Sense Inventory for Improved Abbreviation Disambiguation (2010), in: Bioinformatics, 26:9(1246-1253)

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Okazaki, N., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., A Discriminative Candidate Generator for String Transformations, in: Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing (EMNLP 2008), pages 447-456, 2008

Partalidou, E., Passali, T., Zerva, C., Tsoumakas, G. and Ananiadou, S., Towards Trustworthy Summarization of Cardiovascular Articles: A Factuality-and-Uncertainty-Aware Biomedical LLM Approach, in: Proceedings of the 2nd Workshop on Uncertainty-Aware NLP (UncertaiNLP 2025), pages 200–207, 2025

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Peng, X., Papadopoulos, T., Soufleri, E., Giannouris, P., Xiang, R., Wang, Y., Qian, L., Huang, J., Xie, Q. and Ananiadou, S., Plutus: Benchmarking Large Language Models in Low-Resource Greek Finance, in: Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing (EMNLP), pages 30176–30202, 2025

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Peng, X., Qian, L., Wang, Y., Xiang, R., He, Y., Ren, Y., Jiang, M., Zhao, J., He, H., Han, Y., Feng, Y., Jiang, Y., Cao, Y., Li, H., Yu, Y., Wang, X., Gao, P., Lin, S., Wang, K., Yang, S., Zhao, Y., Liu, Z., Lu, P., Huang, J., Wang, S., Papadopoulos, T., Giannouris, P., Soufleri, E., Chen, N., Xiong, G., Deng, Z., Zhao, Y., Lin, M., Qiu, M., Smith, K., Cohan, A., Liu, X. -Y., Lopez-Lira, A., Chen, X., Tsujii, J., Nie, J., Ananiadou, S. and Xie, Q., MultiFinBen: A Multilingual, Multimodal, and Difficulty-Aware Benchmark for Financial LLM Evaluation, arXiv, 2025

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Piao, S., Ananiadou, S. and McNaught, J., Integrating Annotation Tools into UIMA for Interoperability, in: Proceedings of the UK e-Science AHM Conference 2007, pages 575--582, 2007

Piao, S., Ananiadou, S., Tsuruoka, Y., Sasaki, Y. and McNaught, J., Mining Opinion Polarity Relations of Citations, in: Proceedings of the 7th International Workshop on Computational Semantics, pages 366-371, 2007

Piao, S., Buyko, E., Tsuruoka, Y., Tomanek, K., Kim, J.-D., McNaught, J., Hahn, U., Su, J. and Ananiadou, S., BOOTStrep Annotation Scheme: Encoding Information for Text Mining, in: Proceedings of the 4th Corpus Linguistics Conference (CL2007), 2007

Piao, S., McNaught, J. and Ananiadou, S., Clustering Related Terms with Definitions, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pages 2013-2019, European Language Resources Association (ELRA), 2008

Piao, S., Rea, B., McNaught, J. and Ananiadou, S., Improving Full Text Search With Text Mining Tools, in: Proceedings of the 14th International Conference on Applications of Natural Language to Information Systems, pages 301-302, 2009

Piao, S., Tsuruoka, Y. and Ananiadou, S., Sentiment Analysis with Knowledge Resource and NLP Tools (2009), in: The International Journal of Interdisciplinary Social Sciences, 4:5(17--28)

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Piliouras, D., Korkontzelos, I., Dowsey, A. and Ananiadou, S., Dealing with data sparsity in Drug Named Entity Recognition, in: Proceedings of IEEE International Conference on Healthcare Informatics, Philadelhia, PA, pages 14-21, 2013

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