Publication list - NaCTeM Publications

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Kano, Y., Dobson, P., Nakanishi, M., Tsujii, J. and Ananiadou, S., Text Mining Meets Workflow: Linking U-Compare with Taverna (2010), in: Bioinformatics, 26:19(2486-2487)

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Sasaki, Y., McNaught, J. and Ananiadou, S., The value of an in-domain lexicon in genomics qa (2010), in: Journal of bioinformatics and computational biology, 8:1(147--161)

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Pyysalo, S., Ohta, T., Cho, H. -C., Sullivan, D., Mao, C., Sobral, B., Tsujii, J. and Ananiadou, S., Towards Event Extraction from Full Texts on Infectious Diseases, in: Proceedings of BioNLP 2010, ACL., pages 132--140, 2010

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Kano, Y., Dorado, R., McCrochon, L., Ananiadou, S. and Tsujii, J., U-Compare: An integrated language resource evaluation platform including a comprehensive UIMA resource library, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pages 428--434, 2010

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McEntyre, J. R., Ananiadou, S., Andrews, S., Black, W.J., Boulderstone, R., Buttery, P., Chaplin, D., Chevuru, S., Cobley, N., Coleman, L., Davey, P., Gupta, B., Haji-Gholam, L., Hawkins, C., Horne, A., Hubbard, S. J., Kim, J. -H., Lewin, I., Lyte, V., MacIntyre, R., Mansoor, S., Mason, L., McNaught, J., Newbold, E., Nobata, C., Ong, E., Pillai, S., Rebholz-Schuhmann, D., Rosie, H., Rowbotham, R., Rupp, C. J., Stoehr, P. and Vaughan, P., UKPMC: a full text article resource for the life sciences (2010), in: Nucleic Acids Research, 39:Suppl. 1(D58-D65)

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Sutcliffe, A., Thew, S., de Bruijn, O., Buchan, I., Jarvis, P., McNaught, J. and Procter, R., User Engagement by User-Centred Design in e-Health (2010), in: Philosophical Transactions of the Royal Society A, 368:1926(4209-4224)

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Tsunakawa, T., Okazaki, N., Liu, X. and Tsujii, J., A Chinese-Japanese Lexical Machine Translation through a Pivot Language (2009), in: ACM Transactions on Asian Language Information Processing, 8:2(9:1--9:21)

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Matsubayashi, Y., Okazaki, N. and Tsujii, J., A Comparative Study on Generalization of Semantic Roles in FrameNet., in: Proceedings of ACL-IJCNLP 2009, pages 19--27, 2009

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Sun, X., Zhang, Y., Matsuzaki, T., Tsuruoka, Y. and Tsujii, J., A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character Information, in: Proceedings of NAACL-HLT'09, pages 56--64, 2009

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Cho, H. -C., Lee, D. -G., Lee, J. -T., Stenetorp, P., Tsujii, J. and Rim, H. -C., A Novel Word Segmentation Approach for Written Languages with Word Boundary Markers, in: Proceedings of ACL-IJCNLP Short Papers, pages 29--32, 2009

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Miwa, M., SÃ¦tre, R., Miyao, Y. and Tsujii, J., A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora, in: Proceedings of EMNLP 2009, pages 121--130, 2009

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Matsubayashi, Y., Okazaki, N. and Tsujii, J., Accurate and Robust Semantic Role Labeling using Multiple Generalization Criteria in PropBank, in: Proceedings of the 5th International Conference on Generative Approaches to the Lexicon, pages 97--104, 2009

SÃ¦tre, R., Kazuhiro, Y., Miwa, M., Matsuzaki, T., Kano, Y. and Tsujii, J., AkaneRE Relation Extraction: Protein Interaction and Normalization in the BioCreAtIvE II.5 Challenge, in: BioCreative II.5 Workshop 2009 special session | Digital Annotations, pages 33, CNIO, 2009

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BarrÃ³n-CedeÃ±o, A., Sierra, G. E., Drouin, P. and Ananiadou, S., An Improved Automatic Term Recognition method for Spanish, in: Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009), Mexico City, Mexico, pages 125--136, Springer, 2009

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Yu, K. and Tsujii, J., Bilingual Dictionary Extraction from Wikipedia, in: Proceedings of Machine Translation Summit XII, 2009

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Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S., Biological Event Recognition with Textual Induction, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), pages 91--96, 2009

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Venturi, G., Montemagni, S., Marchi, S., Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S., Bootstrapping a Verb Lexicon for Biomedical Information Extraction, in: Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009), pages 137--148, Springer, 2009

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Uematsu, S., Kim, J.-D. and Tsujii, J., Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics, in: Proceedings of BioNLP 2009 Workshop, pages 162--170, 2009

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Wang, X., Tsujii, J. and Ananiadou, S., Classifying Relations for Biomedical Named Entity Disambiguation, in: Procedings of the Conference on Empirical Methods in Natural Language Processing (EMNLP'09), pages 1513--1522, 2009

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Sasaki, Y., Rea, B. and Ananiadou, S., Clinical Text Classification under the Open and Closed Topic Assumptions (2009), in: International Journal on Data Mining and Bioinformatics (IJDMB), 3:3(299--313)

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Matsuoka, Y., Ghosh, S., Kikuchi, N., SÃ¦tre, R., Kemper, B., Okazaki, N., Ananiadou, S., Tsujii, J. and Kitano, H., Community Platform for Pathway Model Building, in: 10th International Conference on Systems Biology, pages 139-140, Stanford University, 2009

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Thompson, P., Iqbal, S. A., McNaught, J. and Ananiadou, S., Construction of an annotated corpus to support biomedical information extraction (2009), in: BMC Bioinformatics, 10(349)

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. and Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), pages 103--108, 2009

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Hara, T., Miyao, Y. and Tsujii, J., Effective Analysis of Causes and Inter-dependencies of Parsing Errors, in: Proceedings of the 11th International Conference on Parsing Technologies (IWPT-09)., pages 180--191, 2009

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Uematsu, S. and Tsujii, J., Evaluating Contribution of Deep Syntactic Information to Shallow Semantic Analysis, in: Proceedings of the 11th International Conference on Parsing Technologies (IWPTâ€™09), pages 85--88, 2009

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