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Kano, Y., BjÃ¶rne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., SÃ¦tre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. en Tsujii, J., U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481)

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Kano, Y., Miwa, M., Cohen, K. B., Hunter, L., Ananiadou, S. en Tsujii, J., U-Compare: a modular NLP workflow construction and evaluation system (2011), in: IBM Journal of Research and Development, 55:3(11:1 - 11:10)

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Kolluru, B., Hawizy, L., Murray-Rust, P., Tsujii, J. en Ananiadou, S., Using Workflows to Explore and Optimise Named Entity Recognition for Chemistry (2011), in: PLoS ONE, 6:5(e20181)

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Miwa, M., Pyysalo, S., Hara, T. en Tsujii, J., A Comparative Study of Syntactic Parsers for Event Extraction, in: Proceedings of BioNLP 2010, ACL., pagina's 37--45, 2010

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Hanaoka, H., Mima, H. en Tsujii, J., A Japanese Particle Corpus Built by Example-Based Annotation, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC2010), pagina's 1876--1880, 2010

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Ohta, T., Pyysalo, S., Kim, J.-D. en Tsujii, J., A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928)

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Zhang, Y., Matsuzaki, T. en Tsujii, J., A Simple Approach for HPSG Supertagging Using Dependency Information, in: Proceedings of NAACL-HLT 2010, 2010

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Rupp, C. J., Thompson, P., Black, W.J., McNaught, J. en Ananiadou, S., A Specialised Verb Lexicon as the Basis of Fact Extraction in the Biomedical Domain, in: Proceedings of Interdisciplinary Workshop on Verbs: The Identification and Representation of Verb Features (Verb 2010), 2010

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Wang, X. en Ananiadou, S., A Task-Oriented Extension of the Chinese MeSH Concepts Hierarchy, in: Proceedings of the Second Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM), LREC 2010, pagina's 23--30, 2010

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Pyysalo, S., Ohta, T. en Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010

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Okazaki, N., Ananiadou, S. en Tsujii, J., Building a High Quality Sense Inventory for Improved Abbreviation Disambiguation (2010), in: Bioinformatics, 26:9(1246-1253)

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Yu, K., Miyao, Y., Matsuzaki, T., Wang, X., Zhang, Y., Uchimoto, K. en Tsujii, J., Comparison of Chinese Treebanks for Corpus-oriented HPSG Grammar Development (2010), in: Journal of Natural Language Processing (Special Issue on Empirical Methods for Asian Language Processing)

BjÃ¶rne, J., Ginter, F., Pyysalo, S., Tsujii, J. en Salakoski, T., Complex event extraction at PubMed scale (2010), in: Bioinformatics, 26:12(i382-i390)

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Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. en Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, pagina's 214--221, IEEE Computer Society, 2010

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Wang, X., Tsujii, J. en Ananiadou, S., Disambiguating the Species of Biomedical Named Entities Using Natural Language Parsers (2010), in: Bioinformatics, 26:5(661--667)

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Miwa, M., Miyao, Y., SÃ¦tre, R. en Tsujii, J., Entity-Focused Sentence Simplification for Relation Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pagina's 788-796, 2010

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Nawaz, R., Thompson, P. en Ananiadou, S., Evaluating a meta-knowledge annotation scheme for bio-events, in: Proceedings of the Workshop on Negation and Speculation in Natural Language Processing, pagina's 69--77, 2010

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Ananiadou, S., McNaught, J., Thomas, J. en Oliver, S., Evaluating a text mining based educational search portal, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pagina's 3344--3350, 2010

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Miwa, M., Pyysalo, S., Hara, T. en Tsujii, J., Evaluating Dependency Representation for Event Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pagina's 779-787, 2010

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Ohta, T., Pyysalo, S., Miwa, M. en Tsujii, J., Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010

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Ohta, T., Pyysalo, S., Miwa, M., Kim, J.-D. en Tsujii, J., Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, pagina's 19--27, Association for Computational Linguistics, 2010

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Ananiadou, S., Pyysalo, S., Tsujii, J. en Kell, D. B., Event extraction for systems biology by text mining the literature (2010), in: Trends in Biotechnology, 28:7(381-390)

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Miwa, M., SÃ¦tre, R., Kim, J.-D. en Tsujii, J., Event Extraction with Complex Event Classification Using Rich Features (2010), in: Journal of Bioinformatics and Computational Biology, 8:1(131--146)

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Nawaz, R., Thompson, P. en Ananiadou, S., Event Interpretation: A Step towards Event-Centred Text Mining, in: Proceedings of the 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop, 2010

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SÃ¦tre, R., Yoshida, K., Miwa, M., Matsuzaki, T., Kano, Y. en Tsujii, J., Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System (2010), in: Transactions on Computational Biology and Bioinformatics (TCBB), BioCreative II.5 Special Issue, 7:3(442-453)

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