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SÃ¦tre, R., Miwa, M., Yoshida, K. en Tsujii, J., From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pagina's 103--106, 2009

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Tekiner, F., Ananiadou, S., Tsuruoka, Y. en Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009

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Zhang, Y., Matsuzaki, T. en Tsujii, J., HPSG Supertagging: A Sequence Labeling View, in: Proceedings of 11th International Conference on Parsing Technology (IWPT'09), pagina's 210--213, 2009

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Piao, S., Rea, B., McNaught, J. en Ananiadou, S., Improving Full Text Search With Text Mining Tools, in: Proceedings of the 14th International Conference on Applications of Natural Language to Information Systems, pagina's 301-302, 2009

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Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. en Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, pagina's 106--107, 2009

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Kano, Y., McCrochon, L., Ananiadou, S. en Tsujii, J., Integrated NLP Evaluation System for Pluggable Evaluation Metrics with Extensive Interoperable Toolkit, in: Proceedings of the NAACL HLT Workshop on Software Engineering, Testing, and Quality Assurance for Natural Language Processing, pagina's 22--30, 2009

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S. en Tsujii, J., Investigating heterogeneous protein annotations toward cross-corpora utilization (2009), in: BMC Bioinformatics, 10(403)

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Sun, X., Matsuzaki, T., Okanohara, D. en Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), pagina's 1236--1242, 2009

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Okanohara, D. en Tsujii, J., Learning Combination Features with L1 Regularization, in: Proceedings of NAACL-HLT, short papers, pagina's 97--100, 2009

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Hatori, J., Miyao, Y. en Tsujii, J., On Contribution of Sense Dependencies to Word Sense Disambiguation (2009), in: Information and Media Technologies, 4:4(1129--1155)

Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. en Tsujii, J., Overview of BioNLP'09 Shared Task on Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pagina's 1--9, 2009

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Miwa, M., SÃ¦tre, R., Miyao, Y. en Tsujii, J., Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers (2009), in: International Journal of Medical Informatics, 78:12(e39--e46)

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Thew, S., Sutcliffe, A., Procter, R., de Bruijn, O., McNaught, J., Venters, C.C. en Buchan, I., Requirements Engineering for E-science: Experiences in Epidemiology (2009), in: IEEE Software, 26:1(80-87)

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Sun, X., Okazaki, N. en Tsujii, J., Robust Approach to Abbreviating Terms: A Discriminative Latent Variable Model with Global Information, in: Proceedings of ACL-IJCNLP 2009, pagina's 905--913, 2009

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Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C. J., Tsujii, J. en Ananiadou, S., Semantic Search on Digital Document Repositories based on Text Mining Results, in: International Conferences on Digital Libraries and the Semantic Web 2009 (ICSD2009), pagina's 34--48, 2009

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Wu, X., Okazaki, N. en Tsujii, J., Semi-Supervised Lexicon Mining from Parenthetical Expressions in Monolingual Web Pages, in: Proceedings of HLT-NAACL 2009, pagina's 424--432, 2009

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Piao, S., Tsuruoka, Y. en Ananiadou, S., Sentiment Analysis with Knowledge Resource and NLP Tools (2009), in: The International Journal of Interdisciplinary Social Sciences, 4:5(17--28)

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Sun, X. en Tsujii, J., Sequential Labeling with Latent Variables: An Exact Inference Algorithm and An Efficient Approximation, in: Proceedings of EACL 2009, pagina's 772-780, 2009

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Pyysalo, S., Ohta, T., Kim, J.-D. en Tsujii, J., Static Relations: a Piece in the Biomedical Information Extraction Puzzle, in: Proceedings of BioNLP 2009 Workshop, pagina's 1--9, 2009

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Tsuruoka, Y., Tsujii, J. en Ananiadou, S., Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty, in: ACL-IJCNLP 2009, pagina's 477--485, 2009

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Miyao, Y. en Tsujii, J., Supervised Learning of a Probabilistic Lexicon of Verb Semantic Classes, in: Proceedings of EMNLP 2009, pagina's 1328--1337, 2009

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Ananiadou, S., Weissenbacher, D., Rea, B., Pieri, E., Lin, Y., Vis, F., Procter, R. en Halfpenny, P., Supporting Frame Analysis using Text Mining, in: Proceedings of the 5th International Conference on e-Social Science, 2009

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Ananiadou, S., Okazaki, N., Procter, R., Rea, B. en Thomas, J., Supporting Systematic Reviews using Text Mining (2009), in: Social Science Computer Review, 27:4(509-523)

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Okanohara, D. en Tsujii, J., Text Categorization with All Substring Features, in: SIAM International Conference on Data Mining (SDM), 2009

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Ananiadou, S., Text Mining for Biomedicine (2009), in: Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration(1--11)

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