Ananiadou, S. - NaCTeM Publications - Aigaion 2.0

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First name(s):	S.
Last name(s):	Ananiadou

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Kontonatsios, G., Thompson, P., Batista-Navarro, R., MihÄƒilÄƒ, C., Korkontzelos, I. and Ananiadou, S., Extending an interoperable platform to facilitate the creation of multilingual and multimodal NLP applications, in: Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics: System Demonstrations, Association for Computational Linguistics, Sofia, Bulgaria, pages 43-48, 2013

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Piliouras, D., Korkontzelos, I., Dowsey, A. and Ananiadou, S., Dealing with data sparsity in Drug Named Entity Recognition, in: Proceedings of IEEE International Conference on Healthcare Informatics, Philadelhia, PA, pages 14-21, 2013

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MihÄƒilÄƒ, C. and Ananiadou, S., What causes a causal relation? Detecting causal triggers in biomedical scientific discourse, in: 51st Annual Meeting of the Association for Computational Linguistics Proceedings of the Student Research Workshop, Sofia, Bulgaria, pages 38-45, Association for Computational Linguistics, 2013

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Restificar, A., Korkontzelos, I. and Ananiadou, S., A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data (2013), in: BMC Medical Informatics and Decision Making, 13:Suppl 1(S6)

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Ananiadou, S., Thompson, P. and Nawaz, R., Enhancing Search: Events and their Discourse Context, in: Computational Linguistics and Intelligent Text Processing, pages 318-334, Springer, 2013

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Nawaz, R., Thompson, P. and Ananiadou, S., Something old, something new: identifying knowledge source in bio-events (2013), in: International Journal of Computational Linguistics and Applications, 4:1(129-144)

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Batista-Navarro, R., Kontonatsios, G., MihÄƒilÄƒ, C., Thompson, P., Rak, R., Nawaz, R., Korkontzelos, I. and Ananiadou, S., Facilitating the Analysis of Discourse Phenomena in an Interoperable NLP Platform, in: Computational Linguistics and Intelligent Text Processing, pages 559-571, Springer Berlin Heidelberg, 2013

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Van Landeghem, S., BjÃ¶rne, J., Wei, C-. H, Hakala, K., Pyysalo, S., Ananiadou, S., Kao, H. -Y., Lu, Z., Salakoski, T., Van de Peer, Y. and Ginter, F., Large-scale event extraction from literature with multi-level gene normalization (2013), in: PLOS ONE, 8:4(e55814)

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MihÄƒilÄƒ, C., Ohta, T., Pyysalo, S. and Ananiadou, S., BioCause: Annotating and Analysing Causality in the Biomedical Domain (2013), in: BMC Bioinformatics, 14:1(2)

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Ananiadou, S., Ohta, T. and Rutter, M., Text Mining supporting Search for Knowledge Discovery in Diabetes (2012), in: Current Cardiovascular Risk Reports

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Nawaz, R., Thompson, P. and Ananiadou, S., Negated BioEvents: Analysis and Identification (2013), in: BMC Bioinformatics, 14:1(14)

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Mu, T., Miwa, M., Tsujii, J. and Ananiadou, S., Discovering Robust Embeddings in (Dis)Similarity Space for High-Dimensional Lingustic Features (2012), in: Computatational Intelligence

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Ananiadou, S., McNaught, J. and Thompson, P., The English Language in the Digital Age, in: White Paper Series, Springer, 2012

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Kontonatsios, G., Korkontzelos, I., Kolluru, B., Thompson, P. and Ananiadou, S., Deploying and Sharing U-Compare Workflows as Web Services (2013), in: Journal of Biomedical Semantics, 4(7)

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Pyysalo, S., Ohta, T., Miwa, M., Cho, H. -C., Tsujii, J. and Ananiadou, S., Event extraction across multiple levels of biological organization (2012), in: Bioinformatics, 28:18(i575-i581)

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Selected articles from the BioNLP Shared Task 2011, 2012

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Rak, R., Kolluru, B. and Ananiadou, S., Building trainable taggers in a web-based, UIMA-supported NLP workbench, in: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics (ACL 2012), pages 121-126, 2012

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Wang, X., Rak, R., Restificar, A., Nobata, C., Rupp, C. J., Batista-Navarro, R., Nawaz, R. and Ananiadou, S., NaCTeM Systems for BioCreative III PPI Tasks, in: Proceedings of the BioCreative III Workshop, pages 142-147, 2010

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Stenetorp, P., Pyysalo, S., Ohta, T., Ananiadou, S. and Tsujii, J., Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, pages 47-56, 2012

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Ohta, T., Pyysalo, S., Tsujii, J. and Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pages 27-36, 2012

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Pyysalo, S., Stenetorp, P., Ohta, T., Kim, J.-D. and Ananiadou, S., New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, pages 100-108, 2012

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BjÃ¶rne, J., Van Landeghem, S., Pyysalo, S., Ohta, T., Ginter, F., Van de Peer, Y., Ananiadou, S. and Salakoski, T., PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations, in: Proceedings of BioNLP 2012, pages 82-90, 2012

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Liakata, M., Thompson, P., de Waard, A., Nawaz, R., Pander Maat, H. and Ananiadou, S., A three-way perspective on scientiï¬c discourse annotation for knowledge extraction, in: Proceedings of the ACL Workshop on Detecting Structure in Scholarly Discourse (DSSD), pages 37-46, 2012

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Korkontzelos, I., Mu, T. and Ananiadou, S., ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials (2012), in: BMC Medical Informatics and Decision Making, 12:Suppl 1(S3)

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Miwa, M., Thompson, P. and Ananiadou, S., Boosting automatic event extraction from the literature using domain adaptation and coreference resolution (2012), in: Bioinformatics, 28:13(1759-1765)

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