Release of BMC Bioinformatics special issue on BIoNLP Shared Task 2013:Part 1


We are pleased to announce the publication in BMC Bioinformatics of the special issueBioNLP Shared Task 2013: Part 1

The special issue includes extended versions of 3 task and 5 participation papers of the BioNLP 2013 ACL workshop. More information on the Shared Task can be found at:


Overview of the gene regulation network and the bacteria biotope tasks in BioNLP'13 shared task Robert Bossy, Wiktoria Golik, Zorana Ratkovic, Dialekti Valsamou, Philippe Bessières, Claire Nédellec BMC Bioinformatics 2015, 16(Suppl 10):S1 (13 July 2015)

Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Jun'ichi Tsujii, Sophia Ananiadou BMC Bioinformatics 2015, 16(Suppl 10):S2 (13 July 2015)

Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task Jin-Dong Kim, Jung-jae Kim, Xu Han, Dietrich Rebholz-Schuhmann BMC Bioinformatics 2015, 16(Suppl 10):S3 (13 July 2015)

Semi-supervised Learning for the BioNLP Gene Regulation Network Thomas Provoost, Marie-Francine Moens BMC Bioinformatics 2015, 16(Suppl 10):S4 (13 July 2015)

Detection and categorization of bacteria habitats using shallow linguistic analysis Ilknur Karadeniz, Arzucan Ozgur BMC Bioinformatics 2015, 16(Suppl 10):S5 (13 July 2015)

The contribution of co-reference resolution to supervised relation detection between bacteria and biotopes entities Thomas Lavergne, Cyril Grouin, Pierre Zweigenbaum BMC Bioinformatics 2015, 16(Suppl 10):S6 (13 July 2015)

Adaptable, high recall, event extraction system with minimal configuration Makoto Miwa, Sophia Ananiadou BMC Bioinformatics 2015, 16(Suppl 10):S7 (13 July 2015)

Extracting biomedical events from pairs of text entities Xiao Liu, Antoine Bordes, Yves Grandvalet BMC Bioinformatics 2015, 16(Suppl 10):S8 (13 July 2015)

Edited by Claire Nedellec, Jin-Dong Kim, Sampo Pyysalo, Sophia Ananiadou and Pierre Zweigenbaum

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