Gene/Protein Disease Symptom Drug Enzyme Compound
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Query: UNIPROT:Q86TM3 (cage)
 29,987 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

Nuclear DNA is organised into loops, probably by attachment to a supramolecular structure. We describe a method which enables us to map the position of sequences within a loop relative to the point of attachment. Nuclear DNA is isolated unbroken by lysing HeLa cells in 2M NaCl to release structures which retain many of the morphological features of nuclei. Their DNA is supercoiled and so must remain unbroken and looped during lysis. Nucleoids are digested to various degrees with a restriction endonuclease and the cages - and any associated DNA - sedimented free from unattached DNA. The cage-associated DNA is purified and completely fragmented using the same restriction endonuclease. Equal weights of fragmented DNA are separated by gel electrophoresis, transferred to a filter and the relative amounts of the alpha, beta and gamma globin genes on the filter determined by hybridisation to the appropriate probes. The alpha genes, unlike the beta and gamma genes, resist detachment from the cage and so must lie close to the point of attachment to the cage. Our ability to map these genes implies that sequences cannot be attached at random to the cage; rather, specific sequences must be attached, so looping the DNA.
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PMID:Mapping sequences in loops of nuclear DNA by their progressive detachment from the nuclear cage. 743 96

Multiple classes of pharmacological agents including benzodiazepines, cage convulsants like t-butylbicyclophosphorothionate (TBPS), barbiturates and neuroactive steroids allosterically modulate the gamma-aminobutyric acidA receptor-chloride ionophore complex (GRC). The function of benzodiazepines requires a GRC comprised of alpha, beta and gamma subunits, while TBPS, barbiturates and neuroactive steroids will allosterically modulate GRCs comprised of only alpha and beta subunits. Binary alpha beta complexes are still hypothesized to be expressed in the mammalian brain particularly during development and could contribute to the pharmacological action of neuroactive steroids and barbiturates. In order to examine binary alpha beta complexes we report here the establishment of stable cell lines that express high levels of human GABAA receptors comprised of alpha 1 beta 1, alpha 2 beta 1 and alpha 3 beta 1 subunit combinations. The apparent potencies for allosteric modulation of [35S]TBPS for most naturally occurring neuroactive steroids for the binary subunit combinations was similar to that of the gamma-containing subunit combinations. Also discussed is the usefulness of these cell lines for the biophysical analysis of the GABAA receptor stoichiometry.
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PMID:Stable high expression of human gamma-aminobutyric acidA receptors composed of alpha and beta subunits. 767 6

Density functional theory calculations have been carried out to investigate 12-electron reduced alpha, beta, gamma, delta, and epsilon Keggin-like [(MoO4)Mo12O12S12(OH)12]2- polyoxothiometalates (POTMs), which show that the stability order is alpha < beta < gamma < delta < epsilon that is perfectly inverse to the well-known trend of the classical Keggin polyoxometalates. Energy decomposition analysis reveals that the enhanced stabilities of gamma, delta, and epsilon isomers originate the favorable arrangements of their Mo12O12S12(OH)12 shell, in which the edge-sharing [MoV2(mu-S)2O2] fragment plays a fundamental role in stabilizing the overall structure. Both frontier orbital analysis and Mayer indexes exhibit that a Mo-Mo single bond is formed inside the [MoV2(mu-S)2O2] fragment, which leads to the localization of the two reduced electrons. As compared with experimentally discovered cyclic [(C9H3O6)@Mo12O12S12(OH)12]3-, all Keggin POTM structures are less stable due to their disfavored cage framework and the disadvantageous host-guest interaction. However, the epsilon-type Keggin POTM that has the largest similarity to the cyclic species is possibly available in the presence of appropriate templates.
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PMID:Inversed stability order in Keggin polyoxothiometalate isomers: a DFT study of 12-electron reduced alpha, beta, gamma, delta, and epsilon [(MoO4)Mo12O12S12(OH)12]2- anions. 1728 10

We present the cDNA sequences and tissue mRNA expression of peroxisome proliferator-activated receptor (PPAR) alpha, beta and gamma isotypes in the cobia (Rachycentron canadum), a warm water pelagic fish that is becoming a fish of choice for offshore cage farming. RT-PCR and real-time PCR showed that PPARalpha mRNA predominated in red muscle, heart and liver whereas PPARbeta was expressed mainly in liver and pyloric caeca. In contrast, PPARgamma transcripts were detected in all of the tissues examined, with the highest level occurring in visceral fat depot. Our 52-wk time-series investigation showed that while the mRNA expression of PPARgamma in the cobia was positively (P < 0.05) related to its body lipid deposition, a negative (P < 0.05) relationship was found between PPARalpha expression in the liver and body lipid deposition. There was a significant increase in body lipid deposition and hepatic PPARgamma expression as the fish grew. The hepatic PPARgamma expression could be a sufficient parameter describing the bodily expression of PPARgamma because of its positive correlation with PPARgamma expressions in all other tissues. These results showed that PPARgamma and alpha played a pivotal role in the control of lipid metabolic and storage functions in the liver, muscle and visceral fat depot of the cobia.
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PMID:Cloning of peroxisome proliferators activated receptors in the cobia (Rachycentron canadum) and their expression at different life-cycle stages under cage aquaculture. 1876 34

Density functional theory calculations have been carried out to investigate the alpha, beta, gamma, delta, and epsilon isomers of [(MnO(4))Me(12)Sb(12)O(24)](6-) (Me = CH(3)) anions, which are simplified Baker-Figgis models of Keggin-type antimonate complexes in experiments. It is found that the stability order of the five isomers (alpha < beta < gamma < delta < epsilon) perfectly reverses to the well-known trend of the classical Keggin [PW(12)O(40)](3-) anions (alpha > beta > gamma > delta > epsilon), despite their significant similarities in frameworks. On the basis of the building block decomposition method, the stabilizing effect of the edge-sharing [Sb(2)(mu-O)(2)Me(2)] fragment inside gamma, delta, and epsilon structures is confirmed and found to originate from its two energy-favorable components rather than itself as an indivisible unit. Similar behavior is also held by the destabilizing [W(2)(mu-O)(2)O(2)] fragment in [PW(12)O(40)](3-); however, the well-accepted electrostatic repulsion between the short W(VI)-W(VI) contacts cannot be taken as direct evidence. Notably, in the assembly of the [(MnO(4))Me(12)Sb(12)O(24)](6-) structure, all of the octahedral building units incline to compress axially and elongate horizontally, and this is exactly opposite to the deformation pattern observed in the building blocks of Keggin tungstates, which tend to elongate axially and compress horizontally, thus giving rise to the inverted stability order. Furthermore, energy decomposition analysis reveals that the intrinsic property of the anion comes from the spatial arrangements of the metal-oxygen cage and does not change significantly with the type and charge of the encapsulated anion.
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PMID:On the origin of the inverted stability order of the reverse-Keggin [(MnO4)(CH3)12Sb12O24]6-: a DFT study of alpha, beta, gamma, delta, and epsilon isomers. 2049 55