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Query: UNIPROT:Q86TM3 (cage)
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The thermal and photochemical transformations of primary amine radical cations (n-propyl 1.+, n-butyl 5.+) generated radiolytically in freon matrices have been investigated by using low-temperature EPR spectroscopy. Assignment of the spectra was facilitated by parallel studies on the corresponding N,N-dideuterioamines. The identifications were supported by quantum chemical calculations on the geometry, electronic structure, hyperfine splitting constants and energy levels of the observed transient radical species. The rapid generation of the primary species by a short exposure (1-2 min) to electron-beam irradiation at 77 K allowed the thermal rearrangement of 1.+ to be monitored kinetically as a first-order reaction at 125-140 K by the growth in the well-resolved EPR signal of the distonic radical cation .C(2CH2CH2NH3+. By comparison, the formation of the corresponding .CH2CH2CH2CH2NH3+ species from 5.+ is considerably more facile and already occurs within the short irradiation time. These results directly verify the intramolecular hydrogen-atom migration from carbon to nitrogen in these ionised amines, a reaction previously proposed to account for the fragmentation patterns observed in the mass spectrometry of these amines. The greater ease of the thermal rearrangement of 5.+ is in accordance with calculations on the barrier heights for these intramolecular 1,5- and 1,4-hydrogen shifts, the lower barrier for the former being associated with minimisation of the ring strain in a six-membered transition state. For 1.+, the 1,4-hydrogen shift is also brought about directly at 77 K by exposure to approximately 350 nm light, although there is also evidence for the 1,3-hydrogen shift requiring a higher energy. A more surprising result is the photochemical formation of the H2C=N. radical as a minor product under hard-matrix conditions in which diffusion is minimal. It is suggested that this occurs as a consequence of the beta-fragmentation of 1.+ to the ethyl radical and the CH2=NH2+ ion, followed by consecutive cage reactions of deprotonation and hydrogen transfer from the iminonium group. Additionally, secondary ion-molecule reactions were studied in CFCl2CF2Cl under matrix conditions that allow diffusion. The propane-1-iminyl radical CH3CH2CH=N. was detected at high concentrations of the n-propylamine substrate. Its formation is attributed to a modified reaction sequence in which 1.+ first undergoes a proton transfer within a cluster of amine molecules to yield the aminyl radical CH3CH2CH2N.H. A subsequent disproportionation of these radicals can then yield the propane-1-imine precursor CH3CH2CH=NH, which is known to easily undergo hydrogen abstraction from the nitrogen atom. The corresponding butane-1-iminyl radical was also observed.
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PMID:EPR studies of amine radical cations, part 1: thermal and photoinduced rearrangements of n-alkylamine radical cations to their distonic forms in low-temperature freon matrices. 1545 22

The photochemistry of three structurally very similar triphenylmethylsilanes 1, 2, 3 [p-X-C(6)H(4)-CPh(2)-SiMe(3): X = PhCO, 1; H, ; Ph(OCH(2)CH(2)O)C, 3] is described by means of 248 and 308 nm nanosecond laser flash photolysis (ns-LFP), femtosecond LFP, EPR spectroscopy, emission spectroscopy (fluorescence, phosphorescence), ns-pulse radiolysis (ns-PR), photoproduct analysis studies in MeCN, and X-ray crystallographic analysis of the two key-compounds 1 and 2. The photochemical behavior of 1, 2 and 3 is discussed and compared with that of a fourth one, 4, bearing on the p-position an amino group (X = Me(2)N) and whose detailed photochemistry we reported earlier (J. Org. Chem., 2000, 65, 4274-4280). Silane 1 undergoes on irradiation with 248 and 308 nm laser light a fast photodissociation of the C-Si bond giving the p-(benzoyl)triphenylmethyl radical (1*) with a rate constant of k(diss)= 3 x 10(7) s(-1). The formation of 1* is a one-quantum process and takes place via the carbonyl triplet excited state with high quantum yield (Phi(rad)= 0.9); the intervention of the triplet state is clearly demonstrated through the phosphorescence spectrum and quenching experiments with ferrocene (k(q)= 9.3 x 10(9) M(-1) s(-1)), Et(3)N (1.1 x 10(9) M(-1) s(-1)), and styrene (3.1 x 10(9) M(-1) s(-1)) giving quenching rate constants very similar to those of benzophenone. For comparative reasons radical 1* was generated independently from p-(benzoyl)triphenylmethyl bromide via pulse radiolysis in THF and its absorption coefficient at lambda(max)= 340 nm was determined ([epsilon]= 27770 M(-1) cm(-1)). We found thus that the p-PhCO-derivative 1 behaves similar to the p-Me(2)N one (the latter giving the p-(dimethylamino)triphenylmethyl radical with Phi(rad)= 0.9), irrespective of their completely different ground state electronic properties. In contrast, compounds 2, 3 that bear only the aromatic chromophore give by laser or lamp irradiation both, (i) radical products [Ph(3)C* and p-Ph(OCH(2)CH(2)O)C-C(6)H(4)-C(*)Ph(2), respectively] after dissociation of the central C-Si bond (Phi(rad)= 0.16), and (ii) persistent photo-Fries rearrangement products (of the type of 5-methylidene-6-trimethylsilyl-1,3-cyclohexadiene) absorbing at 300-450 nm and arising from a 1,3-shift of the SiMe(3) group from the benzylic to the ortho-position of the aromatic ring (Phi approximately 0.85 for 2). Using fs-LFP on 2 we showed that the S(1) state recorded at 100 fs after the pulse decays on a time scale of 500 fs giving Ph(3)C* through C-Si bond dissociation. In a second step and within the next 10 ps trityl radicals either escape from the solvent cage (the quantum yield of Ph(3)C* formation Phi(rad)= 0.16 was measured with ns-LFP), or undergo in-cage recombination to photo-Fries products. Thus, singlet excited states (S(1)) of the aromatic organosilanes (2, 3) prefer photo-Fries rearrangement products, while triplet excited states (1, 4) favor free radicals. Both reactions proceed via a common primary photodissociation step (C-Si bond homolysis) and differentiate obviously in the multiplicity of the resulting geminate radical pairs; singlet radical pairs give preferably photo-Fries products following an in-cage recombination, while triplet radical pairs escape the solvent cage (MeCN). The results demonstrate the crucial role which is played by the chromophore which prescribes in a sense, (i) the multiplicity of the intervening excited state and consequently that of the resulting geminate radical pair, and (ii) the dominant reaction path to be followed: the benzophenone- and anilino-chromophore present in silanes 1 and 4, respectively, impose effective intersystem crossing transitions (k(isc)= 10(11) s(-1) and 6 x 10(8) s(-1), respectively) leading to triplet states and finally to free radical products, while the phenyl chromophore in 2 and 3, possessing ineffective isc (k(isc)= 6 x 10(6) s(-1)) leads to photo-Fries product formation via the energetic high lying S(1) state [approximately 443 kJ mol(-1)(106 kcal mol(-1))].
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PMID:Triplet- vs. singlet-state imposed photochemistry. The role of substituent effects on the photo-Fries and photodissociation reaction of triphenylmethyl silanes. 1592 Jun 31

A comparative study of C60-based endohedral fullerenes was performed. From an analysis of spin relaxation times of the recently characterized Cu@C60 metallo-endofullerene, it could be shown that the encased ion occupies a well-defined off-centre position even at room temperature. Localization on the timescale of an EPR experiment is combined with charge transfer of approximately two electrons, resulting in the EPR signature of a 3d9 copper ion. This is in contrast to N@C60, for which a nearly complete decoupling from the cage is found. An upper limit for the variance of collision-induced modulation of the anisotropic nitrogen hfi is determined as (A(eff)2)(1/2) < 500 kHz by an analysis of cross peak intensities in a 2D EPR experiment. Pulsed 95 GHZ ENDOR experiments have been performed to confirm that deformation-induced hyperfine anisotropies are expected to be very small in N@C60.
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PMID:Comparative EPR study of Cu@C60 and N@C60 endofullerenes. 1623 91

Sc3@C82 has been investigated by X- and W-band EPR. The isotropic and anisotropic hyperfine interaction between the electron spin and the 45Sc nuclei of the Sc3-triangle was evaluated. In addition, a statistical model analyzing the 13C hyperfine coupling of the C82 cage is applied and its consequences for the charge transfer are discussed. The observed EPR line broadening with decreasing temperature was modeled with a simple exchange model, which considers the molecular motion of the Sc3-triangle inside the C82 cage. This allowed the estimation of the linewidth contributions of the hyperfine- and g-anisotropies as well as the temperature dependence of the exchange rate, which increases rapidly with temperature and follows an exponential law.
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PMID:W- and X-band EPR investigation of Sc3@C82. 1623 95

A novel approach in cancer chemotherapy concerns the attempt to employ radical affording substances (RAS) as pro-drugs able to produce irreversible damages on the tumor cell, so stimulating cellular apoptosis. However, radical species can react quickly towards the chemical environment into which they have been generated before reaching their proper sites of action, i.e. the tumor cells. We recently started a study aiming to accomplish new therapeutic systems for the transport of RAS in biological medium. In this paper we report the effect of stabilization produced by beta-cyclodextrin on carbon centered radicals afforded by some mercaptopyridine congeners which have already been shown to possess strong anticancer activity in vitro. EPR experiments carried out on aqueous solutions of N-acyloxy-pyridinethione analogues like 1 (R = adamantyl, cyclohexyl) in the presence of beta-cyclodextrin, demonstrated that photochemically produced alkyl radicals are involved in an adduct with beta-cyclodextrin which works as a cage preventing the interaction of such radicals with the medium. Furthermore, the presence of beta-cyclodextrin has been shown to delay the generation of radicals in water due to a possible interaction between the cyclodextrin cavity and the mercaptopyridine moiety of 1 which is the part of the molecule responsible for beginning the radical event.
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PMID:A study of free radical release from beta-cyclodextrin-anticancer pro-drugs adducts in water. 1624 45

Manganese(II), iron(II), cobalt(II), and copper(II) derivatives of two inherently chiral, Tris(bipyridyl) cages (L and L') of type [ML]-(PF(6))(2)(solvent)(n) and [FeL'](ClO(4))(2) are reported, where L is the hexa-tertiary butyl-substituted derivative of L'. These products were obtained by using the free cage and metal template procedures; the latter involved the reductive amination of the respective Tris-dialdehyde precursor complexes of iron(II), cobalt(II), or nickel(II). Electrochemical, EPR, and NMR studies have been used to probe the nature of the individual complexes. X-ray structures of the manganese(II), iron(II), and copper(II) complexes of L and the iron(II) complex of L' are presented; these are compared with the previously reported structures of the corresponding nickel(II) complex and metal-free cage (L). In each complex the metal cation occupies the cage's central cavity and is coordinated to six nitrogens from the three bipyridyl groups. The cations [MnL](2+) and [FeL](2+) are isostructural but both exhibit a different arrangement of the bound cage to that observed in the corresponding nickel(II) and copper(II) complexes. The latter have an exo-exo arrangement of the bridgehead nitrogen lone pairs, with the metal inducing a triple helical twist that extends approximately 22 A along the axial length of each complex. In contrast, [MnL](2+) and [FeL](2+) have their terminal nitrogen lone pairs directed endo, causing a significant change in the configuration of the bound ligand. In [FeL'](2+), the cage has both bridgehead nitrogen lone pairs orientated exo. Semiempirical calculations indicate that the observed endo-endo and exo-exo arrangements are of comparable energy.
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PMID:Manganese(II), iron(II), cobalt(II), and copper(II) complexes of an extended inherently chiral tris-bipyridyl cage. 1640 29

Treatment of dimethylmagnesium with the alpha-diimine ligands Ar'N=C(R)C(R)=NAr' [R = naphth-1,8-diyl (1), H (2), CH3 (3); Ar' = 2,6-diisopropylphenyl] in diethyl ether provides the neutral methyl-bridged dimeric complexes [(alpha-diimine-.)Mg+(mu-CH3)]2 via single electron transfer (SET) to the coordinated diimine and elimination of a methyl radical. These biradical species have been characterised by EPR spectroscopy and, for the ligand , X-ray crystallography. In the presence of THF the reaction of ligand proceeds to the diamagnetic [(ene-1,2-diamide)Mg(THF)3] complex in which the diimine ligand has been doubly reduced to an ene-diamide by two successive SET processes. Comparison of the structural data for the free ligand with that obtained for the alpha-diimine radical anion and ene-diamide complexes shows the expected increases in C-N, and decreases in C-C, bond lengths within the N-C-C-N unit consistent with the progressive reduction of the ligand. In the case of ligand , reaction at low temperature provides the complex [Mg(mu2-Me){Ar'NC(Me)2C(Me)NAr'}]2 in which methyl transfer to a ligand imine carbon atom has occurred. This species has also been structurally characterised. This contrasts with the formation of the radical species at room temperature, and indicates the involvement of an intermediate in which the radical products of the SET process are held in close proximity by the solvent cage. Two competing processes of methyl radical escape and methyl transfer to the ligand account for the formation of the observed products at different temperatures.
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PMID:Complexation of dimethylmagnesium with alpha-diimines; structural and EPR characterisation of single electron and alkyl transfer products. 1654 34

A detailed study of the influence of the surrounding protein on magnetic and optical spectra of metalloproteins is presented using the quantum-mechanical/molecular mechanical (QM/MM) approach. The well-studied type I copper site in plastocyanin in the cupric oxidation state is taken as a test case because its spectroscopic properties have been extensively studied and are well understood. The calculations have been performed using nonrelativistic and scalar relativistic (at the level of the zeroth order regular approximation, ZORA) calculations (B3LYP functional). Linear response theory has been used to calculate first- and second-order properties, namely the EPR g-tensor, the central metal hyperfine couplings (HFCs), the HFCs of the directly coordinating ligands, as well as superhyperfine couplings (1H, 14N) from remote nuclei, transition energies, and oscillator strengths. Two different model systems have been defined that do not and do include important amino acids from the second coordination sphere, respectively. For comparison, calculations have been carried out in the gas phase and in a dielectric continuum (conductor like screening model, COSMO) with a dielectric constant of four. The best results were obtained at the scalar relativistic ZORA level for the largest model in conjunction with explicit modeling of the protein environment through the QM/MM procedure, which is also considered to be the highest level of theory used in this work. The protein effects beyond the second coordination sphere were found to be quite substantial (up to 30% changes on some properties), and were found to require an explicit treatment of the protein beyond the second coordination sphere. In addition, the embedding water cage was found to have a nonnegligible influence on the calculated spectroscopic data, which is of the same order as the influence of the protein backbone charges. However, while qualitatively satisfactory, the errors in the calculated spectroscopic parameters are still substantial, and can all be traced back to the fact that the linear-response of the presently available functionals is "too stiff" with respect to the external perturbations at least for the model systems studied here. Ligand field-based approaches are used to correct for systematic errors in the DFT procedures. As a consequence, we propose a new breakdown of the copper hyperfine interaction into Fermi-contact, spin-dipolar and spin-orbit contributions.
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PMID:QM/MM calculations with DFT for taking into account protein effects on the EPR and optical spectra of metalloproteins. Plastocyanin as a case study. 1680 73

Spin-unrestricted zeroth order regular approximation (ZORA) and the scalar relativistic method based on Pauli Hamiltonian implemented in the Amsterdam Density Functional suite were used to calculate the electronic g tensor for isolated covalent {CuNO}(11) and electrostatic {q-NO}(1) species and for various model molecular and nonmolecular {CuNO}(11)-containing systems, epitomizing copper nitrosyl cage adducts in the ZSM-5 zeolite. The predicted g tensor values using the ZORA/VWN scheme were in satisfactory agreement with experimental EPR results. Relativistic, diamagnetic, and paramagnetic contributions to the calculated g tensor were quantified. The nature of the observed Deltag shifts was discussed in terms of the molecular orbital contributions due to the magnetic field-induced couplings and their structure sensitivity. The influence of basis set and exchange-correlation functional on the results was also briefly evaluated.
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PMID:Relativistic density functional calculations of EPR g tensor for eta1{CuNO}(11) species in discrete and zeolite-embedded states. 1683 13

The crystal structure of the bicyclic hexaamine complex [Cu(fac-Me5-tricosane-N6)](ClO4)2.H2O (fac-Me5-tricosane-N6 = facial-1,5,9,13,20-pentamethyl-3,7,11,15,18,22-hexaazabicyclo[7.7.7]tricosane) at 100 K defines an apparently tetragonally compressed octahedral geometry, which is attributed to a combination of dynamic interconversion and static disorder between two tetragonally elongated structures sharing a common short axis. This structure is fluxional at 60 K and above as shown by EPR spectroscopy. Aqueous cyclic voltammetry reveals that a remarkably stable Cu(I) form of the complex is stabilised by the encapsulating nature of the expanded cage ligand.
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PMID:An expanded cavity hexaamine cage for copper(II). 1735 57


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