UNIPROT:Q86TM3 - FACTA Search

Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts: Target Concepts:

Query: UNIPROT:Q86TM3 (cage)
29,987 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

Nucleophilic addition of the peroxynitrite anion, ONOO(-), to the two prototypical carbonyl compounds, acetaldehyde and acetone, was investigated in the pH interval 7.4-14. The process is initiated by fast equilibration between the reactants and the corresponding tetrahedral adduct anion, the equilibrium being strongly shifted to the reactant side. The adduct anion also undergoes fast protonation by water and added buffers. Consequently, the rate of the bimolecular reaction between ONOO(-) and the carbonyl is strongly dependent on the pH and on the concentration of the buffer. The pK(a) of the carbonyl-ONOO adduct was estimated to be approximately 11.8 and approximately 12.3 for acetone and acetaldehyde, respectively. It is shown that both the anionic and the neutral adducts suffer fast homolysis along the weak O-O bond to yield free alkoxyl and nitrogen dioxide radicals. The yield of free radicals was determined to be about 15% with both carbonyl compounds at low and high pH, while the remainder collapses to molecular products in the solvent cage. The rate constants for the homolysis of the adducts vary from ca. 3 x 10(5) to ca. 5 x 10(6) s(-1), suggesting that they cannot act as oxidants in biological systems. This small variation around a mean value of about 10(6) s(-1) suggests that the O-O bond in the adduct is rather insensitive to its protonation state and to the nature of its carbonyl precursor. An overall reaction scheme was proposed, and all the corresponding rate constants were evaluated. Finally, thermokinetic considerations were employed to argue that the formation of dioxirane as an intermediate in the reaction of ONOO(-) with acetone is an unlikely process.
...
PMID:The rate of homolysis of adducts of peroxynitrite to the C=O double bond. 1177 60

Four macrotricyclic cage hosts which feature four positive binding sites oriented toward the center of the intramolecular cavity are presented as promising candidates for anion receptors and they have been expected to play a important role in the selective encapsulation of the halide ion Cl- or Br . The complementarity between a macrotricyclic quaternary ammonium ion and Cl- was achieved by fine-tuning of the four ammonium nitrogen atoms and the endocyclic methylene groups. The cage hosts [R4N4(C5H10)4(C6H12)2]4+ (abbreviated as [556]) showed perfect encapsulation of all chloride ions in acetonitrile at 0 < r= ([Cl-]o/[[556]]o) < or = 1 within the sensitivity of the 1H NMR spectra in combination with a rather slow chemical exchange of the Cl- ion in an encapsulation/decapsulation equilibrium with [556]. Further, the selective encapsulation of all the chloride ions into [556] cage occurs unambiguously at r = 1 in the presence of equimolar amounts of Br-. The structural complementarity of the newly designed [556] host prevails over the Hofmeister-series restraints determined by differences in Gibbs free energy of halide anion solvation.
...
PMID:Selective encapsulation of chloride ions within novel cage host complexes in the presence of equimolar amounts of chloride and bromide ions. 1177 82

The substituent effect of the dihydro[60]fullerenyl group and its hydrophobic parameters have been evaluated quantitatively. The substituent constant has been determined from the pK value of a fullerene-based, para-substituted benzoic acid 1 in 80% dioxane/water (v/v) by NMR spectroscopy. The resulting Hammett sigma value of 0.06, consistent with a small electron-withdrawing effect of C(60), is a consequence of the fact that only inductive effects can be transmitted through the two tetracoordinate carbon atoms between the fullerene pi system and the para-position of the benzoic acid moiety in 1. The parameter pi, which describes the hydrophobic character of the substituent C(60), has been evaluated as the difference between that of 1 and model compound 2. The pi value, which is larger than 3, indicates that the fullerene cage imparts high hydrophobicity to the molecule to which it is attached. Finally, we have evaluated how the fullerene spheroid influences the acid-base properties and nucleophilicity of the pyrrolidine nitrogen in a suitably functionalized fulleropyrrolidine. The fulleropyrrolidine 4 (pK(BD)(+)=5.6) is six orders of magnitude less basic and 1000 times less reactive than its model 3 (pK(BD)(+)=11.6). This may be related to through-space interactions of the nitrogen lone pair and the fullerene pi system.
...
PMID:[60]Fullerene as a substituent. 1189 87

The reaction of the inside protonated form of the tricyclic amine 1,4,8,12-tetraazatricyclo[6.6.3.2(4,12)]nonadecane (1) with iron(III) affords the inside monoprotonated form of the corresponding imine 4,8,12-triaza-1-azoniatricyclo[6.6.3.2(4,12)]nonadec-1(15)-ene (2), which was isolated as the tetrabromozincate salt (2a) in a yield of 78%. The crystal structure of 2a has been solved by X-ray diffraction at T = 120 K. In the imine cation the acidic hydrogen atom and the lone pairs of the nitrogen atoms are oriented toward the inside of the cavity. The acidic hydrogen atom is bound to a nitrogen atom belonging to the triazacyclononane entity. The imine double bond is situated between the N-atom of the triazacyclononane entity and the C-atom belonging to one of the three trimethylene bridges. The imine 2 is stable in acidic solution and the inside coordinated proton is very robust in acidic solution. In basic solution the imine reacts fast to give a quantitative formation of the inside protonated form of the hemiaminal 1,4,8,12-tetraazatricyclo[6.6.3.2(4,12)]nonadecan-5-ol (3). The equilibrium constant K(im) = [3][H(+)]/[2] was determined at three different temperatures from potentiometric measurements, which gave K(im) = 1.57(1) x 10(-5) M at 25 degrees C, Delta S degrees = -83(1) J mol(-1) K(-)(1),and Delta H degrees = 2.6(3) kJ mol(-1) at I = 1.0 M (NaCl). The inside coordinated proton in 3 is labile in basic solution and the rate for NH/ND exchange was determined by (1)H NMR at three different temperatures. The reaction followed the expression k(obs) = k(ex)[OD(-)] with k(ex) = 0.0978(30) dm(3) mol(-1) s(-1) at 25 degrees C, Delta S(++) = 87(4) J mol(-1) K(-1), and Delta H(++) = 104.9(11) kJ mol(-1) at I = 1.0 M (NaCl). The exchange rate is more than 5 x 10(6) times faster than that of the parent saturated cage 1. This extreme enhancement of reactivity is explained by an intramolecular proton transfer reaction mediated by hydroxy and oxy groups flipping in and out of the cavity, which mechanistically has resemblance to the transport of ions in a biological system.
...
PMID:Synthesis, crystal structure, and H/D exchange of the inside protonated form of the cage imine 4,8,12-triaza-1-azoniatricyclo[6.6.3.2(4,12)]nonadec-1(15)-ene. A model for proton transfer through an aliphatic membrane. 1198 73

X-ray absorption spectroscopy on the minimal copper-regulatory domains of the two copper-regulated transcription factors (Ace1 and Mac1) in Saccharomyces cerevisiae revealed the presence of a remarkably similar polycopper cluster in both proteins. The Cu-regulatory switch motif of Mac1 consisting of the C-terminal first Cys-rich motif, designated the C1 domain, binds four Cu(I) ions as does the Cu-regulatory domain of Ace1. The four Cu(I) ions are bound to each molecule in trigonal geometry. An extended X-ray absorption fine structure (EXAFS) arising from outer-shell Cu...Cu interactions at 2.7 and 2.9 A was apparent in each Cu(I) complex indicative of a polycopper cluster. The intensity of the 2.9 A Cu...Cu backscatter peak, apparently diminished by partial cancellation, dominates the EXAFS. The results suggest that CuAce1 and CuMac1(C1) contain somewhat distorted forms of a known [Cu(4)-S(6)] cage in which a core of Cu atoms forming an approximate tetrahedron is bound by bridging thiolates above each of the six edges. The tetracopper clusters bound by Ace1 and Mac1 differ in that the Ace1 cluster is coordinated entirely by cysteinyl thiolate, whereas the cysteine-deficient Mac1 cluster appears to consist of a Cu(4)(S-Cys)(5)(N-His) cluster with a bridging histidyl-derived nitrogen.
...
PMID:Structures of the cuprous-thiolate clusters of the Mac1 and Ace1 transcriptional activators. 1200 10

Endohedral fullerenes N@C(60) and N@C(70) were dissolved in the liquid crystal 4-methoxybenzylidene-4'-n-butylaniline (MBBA) and investigated by electron paramagnetic resonance. In both cases well resolved EPR spectra give proof for molecular orientation in the nematic mesophase. Spectral features are dominated by a nonvanishing zero-field interaction, indicating a deviation from spherical spin density distribution at the encased nitrogen atom. In N@C(70), a maximum order parameter O(33) = 0.18(3), correlated with the long axis of the cage, and a zero-field-splitting parameter D = -2.6(4) MHz were determined. A persistent zero-field splitting is also observed in C(60) via the quartet spin of the encapsulated nitrogen, although no assignment of the director with respect to the molecular frame is possible. The observed line splitting is indicative of pseudo orientation of the rapidly rotating cage in this case.
...
PMID:Electron paramagnetic resonance investigation of endohedral fullerenes N@C(60) and N@C(70) in a liquid crystal. 1216 66

Sediment oxygen consumption, TCO2 production and nutrient fluxes across the sediment-water interface were measured in sediments within and along a transect from four fish pens with production of milkfish (Chanos chanos) in the Bolinao area, The Philippines. The four fish pens were each representing a specific period in the production cycling. There was a positive linear relationship between the rates of sedimentation inside the fish pens and the sediment oxygen consumption indicating that the benthic processes were controlled by the input of organic matter from fish production. The nutrient fluxes were generally higher inside the fish pens, and nitrate was taken up (1.7-5.8 mmol m(-2) d(-1)) whereas ammonium (1-22 mmol m(-2) d(-1)) and phosphate (0.2-4.7 mmol m(-2) d(-1)) were released from the sediments. The sediments were enriched in organic matter with up to a factor 4 compared to outside. A mass balance for one crop of milkfish was constructed based on production data and on measured fluxes of nutrients in the fish pens to assess the loss of carbon and nutrients to the environment. There was a loss to the surroundings of carbon and nitrogen of 51-68% of the total input, whereas phosphorus was buried in the sediments inside the fish pens which acted as net sinks of phosphorus. The results obtained suggest that fish pen culture as practiced in the Bolinao area, leads to even greater impacts on benthic carbon and nutrient cycling than those found in suspended cage cultures.
...
PMID:Impacts of milkfish (Chanos chanos) aquaculture on carbon and nutrient fluxes in the Bolinao area, Philippines. 1222 93

The title compound crystallises as a novel homometallic mixed anion-dianion cage incorporating two four-coordinate diorgano lithiate centres, in addition to eight lithium centres coordinated only by oxygen and nitrogen atoms.
...
PMID:Synthesis and structure of the novel mixed anion-dianion lithium cage compound [(6-LiCH2Py-2-OLi)4(6-CH3Py-2-OLi)2(THF)9]. 1224 Mar 93

The deep-red, air-stable complexes [Pt(2)Hg(2)(P(2)phen)(3)](PF(6))(2), 1, or [Pd(2)Hg(2)(P(2)phen)(3)](PF(6))(2), 2, (P(2)phen is 2,9-bis(diphenylphosphino)-1,10-phenanthroline) are most conveniently prepared by the stoichiometric reaction of either Pt(dba)(2) or Pd(2)(dba)(3).CHCl(3) (dba is dibenzylideneacetone) with P(2)phen and a single drop of elemental mercury in refluxing dichloromethane under an atmosphere of nitrogen. The (31)P[(1)H] NMR spectrum (CD(3)CN) of 1 shows a single sharp resonance at 43.1 ppm for the phosphorus atoms of the P(2)phen ligand with both (195)Pt ((1)J(P-Pt) = 4350 Hz) and (199)Hg ((2)J(P-Hg) = 620 Hz) satellites indicating the Hg(2)(2+) unit is dynamic. Compound 2 has a similar resonance at 44.9 ppm with (199)Hg satellites ((2)J(P-Hg) = 638 Hz). The (199)Hg NMR (CD(2)Cl(2), vs Hg(OAc)(2)) spectrum of 2 shows a heptet pattern at 833 ppm while for 1 a heptet superimposed on a doublet of heptets is observed at 770.8 ppm. The (195)Pt NMR spectrum of 1 displays a quartet at -3071 ppm with (199)Hg satellites and a (1)J(Pt-Hg) value of 1602 Hz. Characterization of 1 and of 2(BF(4)(2) by single-crystal X-ray diffraction studies confirms the metallocryptand structure consisting of three phosphine-imine ligands forming a D(3) symmetric cage with a Hg(2)(2+) ion in its center coordinated to two phenanthroline rings with the Hg-Hg bond (1, 2.7362(6); 2(BF(4)(2), 2.6881(4) A) oriented perpendicular to the vector between the trigonally coordinated Pt(0) or Pd(0) atoms on each end. The Pt-Hg separations in 1 average 2.8143(6) A while in 2(BF(4)(2) the average Pd-Hg separation is 2.7698(5) A. Excitation into the low energy excitation bands of 1 (475 nm) and 2 (430 nm) produces weak emissions centered at 593 nm with shoulders at 530 and 654 nm in 1 and centered at 524 nm with a shoulder at 545 nm in 2.
...
PMID:Pd(0) and Pt(0) metallocryptands encapsulating a spinning mercurous dimer. 1247 50

It was early shown that the macrocyclic Ln(DOTA) complexes (DOTA = 1,4,7,10-tetra-azacyclododecane-N,N',N' ',N' "-tetraacetic acid) exists in solution as a mixture of two enantiomeric pairs of diastereoisomers differing in the ligand conformation, namely, square antiprismatic (SA) and twisted square antiprismatic (TSA) geometries, respectively. Later, extensive (1)H NMR investigations suggested that a coordination change may be superimposed on this conformational equilibrium involving two additional structures in which the metal ion possesses a coordination number of eight (CN 8). It was predicted that these two species, lacking the apical coordinated water molecule, would maintain the SA and TSA coordination geometries, and therefore, they have been labeled as SA' and TSA', respectively. In this work we report the X-ray solid-state crystal structure determination of six Ln(DOTA) complexes representative of all four coordination geometry typologies deduced from NMR solution studies. A distinctive structural feature that discriminates SA (and SA') and TSA (and TSA') structures is represented by the twist angle between the two square planes of the antiprism, the basal four nitrogen, and the apical four oxygen planes. [Ce(DOTA)(H(2)O)](-) displays a TSA structural typology with a twist angle of 25 degrees and a Ce-O(water) distance of 2.59 A. The SA-type structure has been found in the case of complexes with Pr(III), Nd(III), and Dy(III), where the twist angle is 39, 39, and 38 degrees, respectively, and the metal-water oxygen distance varies significantly (Pr-O(w) 2.529 A; Nd-O(w) 2.508 A; and Dy-O(w) 2.474 A). [Tm(DOTA)](-) displays a TSA'-type structure with a twist angle of 24 degrees. As compared with the TSA structure of the corresponding Ce(III) complex, the Tm(III) complex shows an overall marked shrinkage of all metal-nitrogen and metal-oxygen distances (ca. 0.2 A), which reflects the contraction of the metal ionic radius across the series but also the effect associated with the decrease of the CN from 9 to 8. In [Sc(DOTA)](-), the even smaller ionic radius of Sc(III) shifts the geometry of the coordination cage to the more compact SA' typology with a twist angle of 41 degrees, a value very similar to that found in the SA structures of lanthanide(III) ions with CN 9. Finally, an investigation was made into the hydration spheres of the complexes with SA and TSA geometries to account for the experimental evidence of a markedly different rate of water exchange for the two isomeric structures. This is of fundamental importance to the understanding of the corresponding Gd(III) complexes as MRI contrast agents.
...
PMID:Structural variations across the lanthanide series of macrocyclic DOTA complexes: insights into the design of contrast agents for magnetic resonance imaging. 1251 89

<< Previous 1 2 3 4 5 6 7 8 9 10 Next >>