Gene/Protein Disease Symptom Drug Enzyme Compound
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Query: UNIPROT:Q86TM3 (cage)
 29,987 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

A comparative study of C60-based endohedral fullerenes was performed. From an analysis of spin relaxation times of the recently characterized Cu@C60 metallo-endofullerene, it could be shown that the encased ion occupies a well-defined off-centre position even at room temperature. Localization on the timescale of an EPR experiment is combined with charge transfer of approximately two electrons, resulting in the EPR signature of a 3d9 copper ion. This is in contrast to N@C60, for which a nearly complete decoupling from the cage is found. An upper limit for the variance of collision-induced modulation of the anisotropic nitrogen hfi is determined as (A(eff)2)(1/2) < 500 kHz by an analysis of cross peak intensities in a 2D EPR experiment. Pulsed 95 GHZ ENDOR experiments have been performed to confirm that deformation-induced hyperfine anisotropies are expected to be very small in N@C60.
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PMID:Comparative EPR study of Cu@C60 and N@C60 endofullerenes. 1623 91

The first quantitative evidence for the viability of three-dimensional aromatic clusters involving d-orbitals in pseudo-octahedral coinage metal cages M(6)Li(2) (M = Cu, Ag, Au) as well as in tetrahedral coinage metal cages M'(4)Li(4) (M' = Cu, Ag) was obtained computationally. These cages exhibit many features similar to those of their square planar M(4)Li(2) analogues. The large negative nucleus-independent chemical shifts (NICS) at the cage centers indicate three-dimensional delocalization. This diatropic character arises mostly from d-orbital delocalization combined with substantial contributions from the lowest-valence orbitals. The bonding molecular orbitals of the pseudo-octahedral clusters M(6)Li(2) (M = Cu, Ag, Au) are analogous to those in similar octahedral clusters involving p-orbital delocalization (e.g., B(6)H(6)(2-)). The M'(4)Li(4) clusters exhibit two isomeric forms: metal tetrahedral cages tetracapped by lithium cations on the outside [(M'(4)).4Li] and lithium tetrahedra on the inside capped by coinage metal atoms on each of the four faces [(Li(4)).4M]. Whereas the (M'(4)).4Li type structure is preferred for copper, gold and silver favor the (Li(4)).4M arrangement. NBO-NICS analysis shows that the large diatropic character in (M'(4)).4Li structures is due to the favorable contribution from both s- and d-orbitals, whereas the small NICS values in the center of (Li(4)).4M are due only to the diatropic contributions from the s-orbitals.
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PMID:Octahedral and tetrahedral coinage metal clusters: is three-dimensional d-orbital aromaticity viable? 1639 58

The synthesis and characterization of the new polyaza-phenolic-macrobicycle 32-hydroxy-1,4,7,10,13,16,19,22-octaazatricyclo-[11.11.7.1(26,30)]-diatriconta-26,28,Delta(30,32)-triene (L) are reported. L incorporates a 2,6-dimethyl-phenolic unit bridging two opposite amine functions of the [24]aneN(8) polyazamacrocyclic base to obtain a large cage. The basicity and binding properties of L toward Cu(II), Zn(II), and Cl(-) were determined by means of potentiometric measurements in aqueous solution (298.1 +/- 0.1 K, I = 0.15 mol dm(-3)). L can add up to six acidic protons, yielding the H(5)L(5+) species or the H(6)L(6+) species, depending on the ionic medium used. The molecular topology of L permits the formation of a highly positive three-dimensional cavity in the polyprotonated species that is able to host the chloride anion. This was detected both using potentiometric data, log K = 41.33 for the reaction L + 6H(+) + Cl(-) = H(6)LCl(5+), and in (35)Cl NMR experiments that showed interactions also with the H(5)L(5+) and H(4)L(4+) species. The anion is probably hosted inside the three-dimensional cavity of L, and stabilized by H-bonding interactions with the ammonium groups, as depicted in the crystal structure of the H(6)L(6+) cation reported. L forms mono- and dinuclear complexes with all the metal ions investigated; the dinuclear species are the only existing species with an L:M(II) molar ratio of 1:2 at pH higher than 6. The phenolate oxygen atom coordinates the two metal ions in a bridged disposition, drawing them inside the macrobicyclic cavity. The two metals were found to be quite isolated by the medium, and were coordinated by all the amine groups of L, as shown by the crystal structure of the dinuclear [Zn(2)H(-1)L](3+) species. This species can bind guests such as hydroxide and phosphate anions. Studies of anion binding in aqueous solution using pyrochatecol violet as the sensing guest revealed that the [Zn(2)H(-1)L](3+) species is able to bind one phosphate at physiological pH.
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PMID:Synthesis of a large amino-phenolic cage. Synthesis, crystal structures, and acid-base and coordination behavior toward cations and anions. 1639 69

Manganese(II), iron(II), cobalt(II), and copper(II) derivatives of two inherently chiral, Tris(bipyridyl) cages (L and L') of type [ML]-(PF(6))(2)(solvent)(n) and [FeL'](ClO(4))(2) are reported, where L is the hexa-tertiary butyl-substituted derivative of L'. These products were obtained by using the free cage and metal template procedures; the latter involved the reductive amination of the respective Tris-dialdehyde precursor complexes of iron(II), cobalt(II), or nickel(II). Electrochemical, EPR, and NMR studies have been used to probe the nature of the individual complexes. X-ray structures of the manganese(II), iron(II), and copper(II) complexes of L and the iron(II) complex of L' are presented; these are compared with the previously reported structures of the corresponding nickel(II) complex and metal-free cage (L). In each complex the metal cation occupies the cage's central cavity and is coordinated to six nitrogens from the three bipyridyl groups. The cations [MnL](2+) and [FeL](2+) are isostructural but both exhibit a different arrangement of the bound cage to that observed in the corresponding nickel(II) and copper(II) complexes. The latter have an exo-exo arrangement of the bridgehead nitrogen lone pairs, with the metal inducing a triple helical twist that extends approximately 22 A along the axial length of each complex. In contrast, [MnL](2+) and [FeL](2+) have their terminal nitrogen lone pairs directed endo, causing a significant change in the configuration of the bound ligand. In [FeL'](2+), the cage has both bridgehead nitrogen lone pairs orientated exo. Semiempirical calculations indicate that the observed endo-endo and exo-exo arrangements are of comparable energy.
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PMID:Manganese(II), iron(II), cobalt(II), and copper(II) complexes of an extended inherently chiral tris-bipyridyl cage. 1640 29

A sterically hindered aryl phosphonic acid ArP(O)(OH)2 (2) (Ar = 2,4,6-isopropylphenyl) was synthesized and structurally characterized. ArP(O)(OH)2 forms an interesting hydrogen-bonded corrugated sheet-type supramolecular structure in the solid-state. A three-component reaction involving ArP(O)(OH)2, 3,5-dimethylpyrazole(DMPZH), and Cu(CH3COO)2.H2O produces the tetranuclear Cu(II) compound [Cu4(mu3-OH)2{ArPO2(OH)}2(CH3CO2)2(DMPZH)4][CH3COO]2.CH2Cl2 (3). A similar three-component reaction involving ArP(O)(OH)2, 3,5-dimethylpyrazole, and Zn(CH3COO)2.2H2O yields the tetranuclear Zn(II) compound [Zn4{ArPO3}2{ArPO2(OH)}2{DMPZH}4(DMPZ)2].5MeOH (4). While 3 has been found to have an asymmetric cage structure where two dinuclear copper cores are bridged by bidentate [ArPO2(OH)]- ligands, 4 possesses an open-book tricyclic structure composed of three fused metallophosphonate rings. Magnetic studies on 3 revealed antiferromagnetic behavior.
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PMID:Assembly of lipophilic tetranuclear (Cu4 and Zn4) molecular metallophosphonates from 2,4,6-triisopropylphenylphosponic acid and pyrazole ligands. 1660 93

The tetradentate ligand L(naph) contains two N-donor bidentate pyrazolyl-pyridine units connected to a 1,8-naphthyl core via methylene spacers; L45 and L56 are chiral ligands with a structure similar to that of L(naph) but bearing pinene groups fused to either C4 and C5 or C5 and C6 of the terminal pyridyl rings. The complexes [Cu(L(naph))](OTf) and [Ag(L(naph))](BF4) have unremarkable mononuclear structures, with Cu(I) being four-coordinate and Ag(I) being two-coordinate with two additional weak interactions (i.e., "2 + 2" coordinate). In contrast, [Cu4(L(naph))4][BF4]4 is a cyclic tetranuclear helicate with a tetrafluoroborate anion in the central cavity, formed by an anion-templating effect; electrospray mass spectrometry (ESMS) spectra show the presence of other cyclic oligomers in solution. The chiral ligands show comparable behavior, with [Cu(L45)](BF4) and [Ag(L45)](ClO4) having similar mononuclear crystal structures and with the ligands being tetradentate chelates. In contrast, [Ag4(L56)4](BF4)4 is a cyclic tetranuclear helicate in which both diastereomers of the complex are present in the crystal; the two diastereomers have similar gross geometries but are significantly different in detail. Despite their different crystal structures, [Ag(L45)](ClO4) and [Ag4(L56)4](BF4)4 behave similarly in solution according to ESMS studies, with a range of cyclic oligomers (up to Ag9L9) forming. With transition-metal dications Co(II), Cu(II), and Cd(II), L(naph) generates a series of unusual dodecanuclear coordination cages [M12(L(naph))18]X24 (X- = ClO4- or BF4-) in which the 12 metal ions occupy the vertices of a truncated tetrahedron and a bridging ligand spans each of the 18 edges. The central cavity of each cage can accommodate four counterions, and each cage molecule is chiral, with all 12 metal trischelates being homochiral; the crystals are racemic. Extensive aromatic stacking between ligands around the periphery of the cages appears to be a significant factor in their assembly. The chiral analogue L45 forms the simpler tetranuclear, tetrahedral coordination cage [Zn4(L45)6](ClO4)(8), with one anion in the central cavity; the steric bulk of the pinene chiral auxiliaries prevents the formation of a dodecanuclear cage, although trace amounts of [Zn12(L45)18](ClO4)24 can be detected in solution by ESMS. Formation of [Zn4(L45)6](ClO4)8 is diastereoselective, with the chirality of the pinene groups controlling the chirality of the tetranuclear cage.
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PMID:Coordination chemistry of tetradentate N-donor ligands containing two pyrazolyl-pyridine units separated by a 1,8-naphthyl spacer: dodecanuclear and tetranuclear coordination cages and cyclic helicates. 1667 49

The title compound, [Cu8(C8H24O2Si)2(C3H7NO)8].C4H4N2.C3H7NO, features a sandwich-like cage enclosing a pyrazine molecule, both situated on a centre of inversion. In addition, the crystal structure contains one dimethylformamide molecule which is disordered over a centre of inversion. The copper layer, containing eight atoms, is located between two siloxanolate fragments. The whole structure of Cu atoms and siloxanolate rings is distorted by the pyrazine molecule, leading to an oval form. As a result, the angles between the Cu atoms differ at the copper layer. The difference in the angles could lead to some deviations in the Cu-Cu exchange interactions within the copper ring, which is of interest for molecular magnetism.
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PMID:Bis(mu6-cis-2,4,6,8,10,12,14,16-octamethylcyclooctasiloxane-2,4,6,8,10,12,14,16-octolato)octakis[(dimethylformamide)copper(II)] dimethylformamide solvate enclosing a pyrazine molecule. 1667 82

The diet of cage-farmed Atlantic salmon contains a range of trace metals, some of which have toxic properties, e.g. zinc, copper and cadmium. A survey of metal concentrations (ICP-MS analysis) in surface sediments of ca. 70 stations was carried out in both May and December 2000 around a Scottish fish farm. Additionally, at 13 stations on 2 orthogonal transects centered on the farm, sediments were analysed at 1cm intervals to 8 cm depth. Maximum concentrations in surface sediments were 921, 805 and 3.5 microg g(-1) for Zn, Cu and Cd, respectively, and were found at stations near the fish farm. The calculated losses from the farm (feed input minus fish output) were 87.0%, 4.3% and 14.0% of the background-corrected inventories for Zn, Cu and Cd, respectively, indicating that for Cu and Cd at least, the feed is not the only source.
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PMID:Copper, zinc and cadmium in marine cage fish farm sediments: an extensive survey. 1676 69

A detailed study of the influence of the surrounding protein on magnetic and optical spectra of metalloproteins is presented using the quantum-mechanical/molecular mechanical (QM/MM) approach. The well-studied type I copper site in plastocyanin in the cupric oxidation state is taken as a test case because its spectroscopic properties have been extensively studied and are well understood. The calculations have been performed using nonrelativistic and scalar relativistic (at the level of the zeroth order regular approximation, ZORA) calculations (B3LYP functional). Linear response theory has been used to calculate first- and second-order properties, namely the EPR g-tensor, the central metal hyperfine couplings (HFCs), the HFCs of the directly coordinating ligands, as well as superhyperfine couplings (1H, 14N) from remote nuclei, transition energies, and oscillator strengths. Two different model systems have been defined that do not and do include important amino acids from the second coordination sphere, respectively. For comparison, calculations have been carried out in the gas phase and in a dielectric continuum (conductor like screening model, COSMO) with a dielectric constant of four. The best results were obtained at the scalar relativistic ZORA level for the largest model in conjunction with explicit modeling of the protein environment through the QM/MM procedure, which is also considered to be the highest level of theory used in this work. The protein effects beyond the second coordination sphere were found to be quite substantial (up to 30% changes on some properties), and were found to require an explicit treatment of the protein beyond the second coordination sphere. In addition, the embedding water cage was found to have a nonnegligible influence on the calculated spectroscopic data, which is of the same order as the influence of the protein backbone charges. However, while qualitatively satisfactory, the errors in the calculated spectroscopic parameters are still substantial, and can all be traced back to the fact that the linear-response of the presently available functionals is "too stiff" with respect to the external perturbations at least for the model systems studied here. Ligand field-based approaches are used to correct for systematic errors in the DFT procedures. As a consequence, we propose a new breakdown of the copper hyperfine interaction into Fermi-contact, spin-dipolar and spin-orbit contributions.
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PMID:QM/MM calculations with DFT for taking into account protein effects on the EPR and optical spectra of metalloproteins. Plastocyanin as a case study. 1680 73

Spin-unrestricted zeroth order regular approximation (ZORA) and the scalar relativistic method based on Pauli Hamiltonian implemented in the Amsterdam Density Functional suite were used to calculate the electronic g tensor for isolated covalent {CuNO}(11) and electrostatic {q-NO}(1) species and for various model molecular and nonmolecular {CuNO}(11)-containing systems, epitomizing copper nitrosyl cage adducts in the ZSM-5 zeolite. The predicted g tensor values using the ZORA/VWN scheme were in satisfactory agreement with experimental EPR results. Relativistic, diamagnetic, and paramagnetic contributions to the calculated g tensor were quantified. The nature of the observed Deltag shifts was discussed in terms of the molecular orbital contributions due to the magnetic field-induced couplings and their structure sensitivity. The influence of basis set and exchange-correlation functional on the results was also briefly evaluated.
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PMID:Relativistic density functional calculations of EPR g tensor for eta1{CuNO}(11) species in discrete and zeolite-embedded states. 1683 13


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