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Query: UNIPROT:Q86TM3 (cage)
 29,987 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

1. A survey of the concentration and emission rates of aerial ammonia, nitrous oxide, methane, carbon dioxide, dust and endotoxin was undertaken in 4 examples each of typical UK broiler, cage and perchery houses over 24 h during winter and summer. 2. Overall the air quality within the poultry houses was unsatisfactory as judged by the dual criteria of farmer health and bird performance. 3. Mean concentrations of ammonia ranged from 12.3 to 24.2 ppm while concentrations of methane and nitrous oxide were close to ambient levels. Mass concentrations of aerial dust ranged from 2 to 10 mg/m3 and 0.3 to 1.2 mg/m3 for inspirable and respirable fractions respectively, while endotoxin concentration was typically about 0.1 microgram/m3 (inspirable fraction). 4. Emission rates of gaseous ammonia were rapid (9.2 g (NH3)/h per 500 kg live body weight) and uniform across the three types of building, while emissions of methane and nitrous oxide were slow. Rates of dust emission ranged from 0.86 to 8.24 g/h per 500 kg live body weight in the inspirable size fraction.
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PMID:Concentrations and emission rates of aerial ammonia, nitrous oxide, methane, carbon dioxide, dust and endotoxin in UK broiler and layer houses. 908 9

The rhenacarborane salt Cs[Re(CO)3(eta5-7,8-C2B9H11)] (1) has been used to synthesize the tetranuclear metal complex [[ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3]2[mu-Ph2P(CH2)2PPh2]] (3) where two [ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3] fragments have been shown by X-ray crystallography to be bridged by a single 1,2-bis(diphenylphosphino)ethane ligand. Reaction of 1 with Ag[BF4] in the presence of the ligands bis- or tris(pyrazol-1-yl)methane yields the complexes [ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3[kappa2-CH2(C3H3N2-1)2]] (4) or [[ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3]2[mu-kappa1,kappa2-CH(C3H3N2-1)3]] (5), respectively. From X-ray studies, the former comprises a Re-Ag bond bridged by the carborane cage and with the bis(pyrazol-1-yl)methane coordinating the silver(I) center in an asymmetric kappa(2) mode. Complex 5 was unexpectedly found to contain a tris(pyrazol-1-yl)methane bridging two [ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3] fragments in a kappa1,kappa2 manner. Treatment of 1 with Ag[BF4] in the presence of 2,2'-dipyridyl and 2,2':6',2' '-terpyridyl yields [ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3[kappa2-(C5H4N-2)(2)]] (6) and [ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3[kappa3-C5H3N(C5H4N-2)2-2,6]] (7). The X-ray structure determination of 7 revealed an unusual pentacoordinated silver(I) center, asymmetrically ligated by a kappa3-2,2':6',2' '-terpyridyl molecule. The same synthetic procedure using N,N,N',N'-tetramethylethylenediamine gave a tetranuclear metal complex [[ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3]2[mu-Me2N(CH2)2NMe2]2] (8) which is believed, in the solid state, to be bridged between the silver atoms by two of the diamine molecules. The salt 1 with Ag[BF4] in the absence of any added ligand gave the tetrameric cluster [ReAg[mu-5,6,10-(H)3-eta5-7,8-C2B9H8](CO)3]4 (9) where, in the solid state, four [ReAg(mu-10-H-eta5-7,8-C2B9H10)(CO)3] units are held together by long interunit B-H right harpoon-up Ag bonds.
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PMID:Silver as an exopolyhedral auxiliary to the rhenacarborane anion [Re(CO)3(eta5-7,8-C2B9H11)]-. 1130 48

The structure of a new methane hydrate has been solved at 3 GPa from neutron and x-ray powder diffraction data. It is a dihydrate in which a 3D H-bonded network of water molecules forms channels surrounding the methane molecules. The network is closely related to that of ice-Ih and the methane-water system appears to be the first in which a cage clathrate hydrate is transformed into an ice-related hydrate (a "filled ice").
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PMID:Transition from cage clathrate to filled ice: the structure of methane hydrate III. 1173 47

The mechanism of formation of methane hydrate is investigated here at a molecular level. The key to whether or not methane hydrates can be formed is the stability of the hydrate structure. This paper deals with a computer simulation of methane hydrate type 1 formation by a molecular dynamics method and an accurate description of the crystal structure. Computer simulation results show that very stable type 1 methane hydrates can be formed below 275 K, in which 46 water and 8 methane molecules are contained in a single cubic unit cell of length 12.0 A. Above 275 K, the stability of the hydrates increasingly degrades, logarithmically as a power function, up to 300 K, with no stability at 350 K. Pressure, as a parameter of formation conditions, increases with temperature and becomes tremendously high at 350 K. Hydrates with various hydration numbers (at least one guest molecule in a small cage) have roughly the same degree of stability, but higher pressures are required for hydrates with fewer guest molecules. Empty hydrates dissolve above 275 K.
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PMID:Visualization of molecular dynamics by simulation. 1249 97

Long-time-scale molecular dynamics simulations are presented of the spontaneous formation of methane hydrate at a methane/liquid water interface. The water film was prepared at 300 K, 30 bar and showed no significant hydrate order. On crash cooling to 250 K, 300 bar (about 20 K subcooling), the system showed a rapid growth of hydrate clusters. Contrary to popular models for hydrate nucleation, the clusters formed first as two-dimensional arrangements and only later into three-dimensional cage structures; the results are, however, consistent with the local order model proposed recently. The hydrate clusters showed clear signatures of the type II hydrate structure even though the type I structure is the thermodynamically stable form for methane hydrate; this is in accord with the results of recent diffraction experiments.
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PMID:Molecular dynamics study of gas hydrate formation. 1269 78

The fluorination reaction of methane and isobutane by molecular F(2) with and without CHCl(3) solvent was studied with the ab initio and ONIOM theoretical calculations. The electrophilic pathway for the RH + F(2) reaction in general is a two-step process, consisting of hydride abstraction leading to an intermediate of the type R(+)(delta)...HF...F(-)(delta), followed by complicated rearrangement to give the electrophilic substitution product, RF + HF. In the case of methane, the overall barrier for this reaction is too high for the reaction to take place under mild conditions even in the presence of CHCl(3) solvent molecules. In the case of isobutane without CHCl(3), the electrophilic pathway has a high rate-determining barrier of 25 kcal/mol, and is not likely to take place; the radical process forming t-Bu* + HF + F* may be preferred. However, the t-Bu(+)(delta)...HF...F(-)(delta) intermediate and, in particular, the transition state TS2 for rearrangement of the intermediate are highly ionic, and are stabilized dramatically when a few CHCl(3) solvent molecules form a solvation cage. The electrophilic reaction for isobutane + F(2) has a low overall barrier when at least three CHCl(3) molecules are present and can take place under mild conditions with full retention of configuration.
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PMID:A theoretical study of the mechanism of selective fluorination of saturated hydrocarbons by molecular fluorine. Participation of CHCl3 solvent molecules in the ionic process. 1453

The tripodal ligand 1,3,5-(CH3)3C6[CH2OCH2C(pz)3]3 (L1, pz=pyrazolyl ring) reacts with AgBF4 to yield ([L12Ag3(CH3CN)](BF4)3).(CH3CN)4, an inclusion complex in which the encapsulated acetonitrile cannot escape the triangular cage unit in either the solid or solution phase. The analogous hexatopic ligand C6[CH2OCH2C(pz)3]6 forms a 2-dimensional polymer composed of similar triangular cage units, again with the encapsulation of one acetonitrile molecule, linked by the additional tris(pyrazolyl)methane units. In contrast, the complex formed with L1 and Cd2+ has a double, open cage structure holding two diethyl ether molecules.
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PMID:Synthesis of open and closed metallacages using novel tripodal ligands: unusually stable silver(I) inclusion compound. 1465 64

We present a study of the structure of a fully deuterated methane hydrate under the geological conditions found in the world's oceans. In situ high-resolution neutron diffraction experiments have been performed at temperatures of 220, 275, and 280 K and a pressure of 100 bar, corresponding to the conditions at 1000 m water depth. The data were analyzed with a combination of Rietveld refinement and maximum entropy methods. From the Rietveld refinement, precise atomic parameters of the host lattice could be determined, indicating increasing distortions of the structure of the cages at elevated temperatures and pressures. Debye-Waller factors of the encaged CD(4) molecules have been found to exceed the values of the Debye-Waller factors of the D(2)O molecules considerably. In the large cage of structure type I the thermal center-of-mass displacements of the guests are 5-10 times larger than those of the water molecules. From the maximum entropy analysis maps of the scattering length density have been obtained, showing details of the vibrational amplitudes of the atoms in methane hydrate. The Debye-Waller factors of all molecules have been found to deviate considerably from a simple spherical geometry.
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PMID:The structure of methane hydrate under geological conditions a combined Rietveld and maximum entropy analysis. 1526 39

We present a modeling technique that combines a statistical-mechanical coarse-graining scheme with a nonequilibrium molecular simulation algorithm to provide an efficient simulation of steady-state permeation across a microporous material. The coarse-graining scheme is based on the mapping of an atomistic model to a lattice using multidimensional free-energy and transition-state calculations. The nonequilibrium simulation algorithm is a stochastic, lattice version of the recently developed atomistic dual-control-volume grand canonical molecular dynamics. We demonstrate the approach on a model of methane permeating through a bulk portion of siliceous zeolite ZK4 at 300 K under imposed fugacity differences. We predict the coarse-grained (cage-level) density profiles and observe the development of nonlinearities as the magnitude of the fugacity difference is increased. From the net flux of methane we also predict a mean permeability coefficient under the various conditions. The simulation results are obtained over time scales on the order of microseconds and length scales on the order of dozens of nanometers.
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PMID:Coarse-grained nonequilibrium approach to the molecular modeling of permeation through microporous membranes. 1526 2

The first single-crystal diffraction studies on methane, propane, methane/propane, and adamantane gas hydrates SI, SII, and SH have been performed. To circumvent the problem of very slow crystal growth, a novel technique of in situ cocrystallization of gases and liquids resulting in oligocrystalline material in a capillary has been developed. With special data treatment, termed oligo diffractometry, structural data of the gas hydrates of methane, acetylene, propane, a propane/ethanol/methane-mixture and an adamantane/methane-mixture were obtained. Cell parameters are in accord with reported values. Host network and guest are subject to extensive disorder, reducing the reliability of structural information. It was found that most cages are fully occupied by a guest molecule with the exception of the dodecahedral cage in the acetylene hydrate which is only filled to 60%. For adamantane in the icosahedral cage a disordered model is proposed.
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PMID:Gas hydrate single-crystal structure analyses. 1528 33


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