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Query: UNIPROT:Q86TM3 (cage)
 29,987 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

The reaction of 4-ethynyl-pyridine with tert-butyl lithium followed by its addition to (Me3tacn)RhCl3 affords the facial octahedral complex (Me3tacn)Rh(CCPy)3, condensation of which with the square planar complex cis-(DCPE)Pt(NO3)2 results in a self-assembled trigonal bipyramidal cage with Rh(III) and Pt(II) atoms occupying the vertices.
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PMID:Synthesis and characterization of a trigonal bipyramidal supramolecular cage based upon rhodium and platinum metal centers. 1708 70

By incorporation of NO3- ligands with trigonal planar geometry as surface modifiers into the lanthanide cluster core backbone to remarkably improve the dimension of cluster cores, two novel lanthanide cluster compounds, Dy30I(micro3-OH)24(micro3-O)6(NO3)9(IN)41(OH)3(H2O)38 (1) and Dy104I4(micro3-OH)80(micro3-O)24(NO3)36(IN)125(OH)19(H2O)167 (2) (HIN = isonicotinic acid), have been obtained under hydrothermal conditions. Single-crystal X-ray diffraction shows that in both cluster compounds, the block blocks of [Dy26(micro3-OH)20(micro3-O)6(NO3)9I]36+, [Dy26], are the largest cage-shaped lanthanide cluster cores known. Compound 1 is the first tetramer based on the linkage of two different types of high-nuclearity lanthanide clusters and IN ligands, while compound 2 represents the first tetramer constructed by [Dy26] clusters and IN linkers.
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PMID:Surface modification of high-nuclearity lanthanide clusters: two tetramers constructed by cage-shaped [Dy26] clusters and isonicotinate linkers. 1737 54

Molecular dynamics simulations have been used to investigate the behavior of aqueous sodium nitrate in interfacial environments. Polarizable potentials for the water molecules and the nitrate ion in solution were employed. Calculated surface tension data at several concentrations are in good agreement with measured surface tension data. The surface potential of NaNO3 solutions at two concentrations also compare favorably with experimental measurements. Density profiles suggest that NO3- resides primarily below the surface of the solutions over a wide range of concentrations. When the nitrate anions approach the surface of the solution, they are significantly undercoordinated compared to in the bulk, and this may be important for reactions where solvent cage effects play a role such as photochemical processes. Surface water orientation is perturbed by the presence of nitrate ions, and this has implications for experimental studies that probe interfacial water orientation. Nitrate ions near the surface also have a preferred orientation that places the oxygen atoms in the plane of the interface.
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PMID:Molecular dynamics simulations of the solution-air interface of aqueous sodium nitrate. 1740 16

The pyridine-appended nonchelating bidentate ligands 1,4-bis(3-pyridyl)benzene (1) and 4,4'-bis(3-pyridyl) biphenyl (2) were complexed with a naked Pd(II) ion for the construction of molecular cage compounds. Prior to these experiments, the complexation of the ligands with cis-[Pd(en)(NO3)2] was also examined, because self-assemblies from the cis-protected Pd(II) ion were expected to be simple motifs that constitute the assemblies from naked Pd(II) ion. The structures of the self-assembled compounds resulting from 1 and [Pd(en)(NO3)2] depended on the solvent employed. In aqueous solution, an M2L2 trenchlike compound was obtained. In dimethyl sulfoxide, however, a mixture of the M2L2 trench and an M3L3 macrocycle was found in equilibrium, the dynamic nature of which was confirmed by the concentration-dependent nature of the species. At higher concentration, an M4L4 macrocycle was mostly observed. The complexation of 1 with naked Pd(II) ions was expected to produce novel structures that are combinations of the M(n)L(n) type frameworks. A peculiar tetrahedral M4L8 assembly was obtained quantitatively from 1 and Pd(NO3)2, rather than the smallest possible M3L6 double-walled triangle. Interestingly, the use of Pd(CF3SO3)2 resulted in the sole formation of the latter structure. Thus, the anion is important as a template in the formation of these assemblies. Ligand 2, which contains an extra p-phenylene unit compared to 1, behaved in a similar manner when treated with [Pd(en)(NO3)2], but showed subtle differences with naked Pd(II) ions. With Pd(NO3)2, 2 gave mostly a tetrahedron along with a double-walled triangle. With Pd(CF3SO3)2, this longer ligand formed a double-walled triangle with a negligible amount of tetrahedra. A single discrete assembly of a perfect tetrahedron was obtained from 2 and Pd(II) ions by choosing p-tosylate as a counterion.
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PMID:Dynamic self-assembly of an M3L6 molecular triangle and an M4L8 tetrahedron from naked Pd(II) ions and bis(3-pyridyl)-substituted arenes. 1744 Oct 41

The first coordination sphere of the uranyl cation in room-temperature ionic liquids (ILs) results from the competition between its initially bound counterions, the IL anions, and other anions (e.g., present as impurities or added to the solution). We present a joined spectroscopic (UV-visible and extended X-ray absorption fine structure)-simulation study of the coordination of uranyl initially introduced either as UO2X2 salts (X-=nitrate NO3-, triflate TfO-, perchlorate ClO4-) or as UO2(SO4) in a series of imidazolium-based ILs (C4mimA, A-=PF6-, Tf2N-, BF4- and C4mim=1-methyl-3-butyl-imidazolium) as well as in the Me3NBuTf2N IL. The solubility and dissociation of the uranyl salts are found to depend on the nature of X- and A-. The addition of Cl- anions promotes the solubilization of the nitrate and triflate salts in the C4mimPF6 and the C4mimBF4 ILs via the formation of chloro complexes, also formed with other salts. The first coordination sphere of uranyl is further investigated by molecular dynamics (MD) simulations on associated versus dissociated forms of UO2X2 salts in C4mimA ILs as a function of A- and X- anions. Furthermore, the comparison of UO2Cl(4)2-, 2 X- complexes with dissociated X- anions, to the UO2X2, 4 Cl- complexes with dissociated chlorides, shows that the former is more stable. The case of fluoro complexes is also considered, as a possible result of fluorinated IL anion's degradation, showing that UO2F42- should be most stable in solution. In all cases, uranyl is found to be solvated as formally anionic UO2XnAmClp2-n-m-p complexes, embedded in a cage of stabilizing IL imidazolium or ammonium cations.
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PMID:Uranyl coordination in ionic liquids: the competition between ionic liquid anions, uranyl counterions, and Cl- anions investigated by extended X-ray absorption fine structure and UV-visible spectroscopies and molecular dynamics simulations. 1750 8

Abstract: On basis of field data measured during 4 cruises from August 2004 to May 2005, concentrations of NH4+ -N, NO3- -N, NO2- -N in overlying and interstitial waters of sediments in net-cage culture areas of Tangdao Bay were analyzed. Moreover, diffusive fluxes of dissolved inorganic nitrogen from sediments were estimated by Fick's first law. Results showed that the main form of inorganic nitrogen in overlying and interstitial waters of sediments was NO3- -N, accounting for 73.34% and 61.45% respectively. Concentrations distributions of dissolved inorganic nitrogen (DIN) and NO3- -N in overlying water varied seasonally, which got their maximum concentration in October 2004 while the NH4+ -N concentration showed a little difference. The seasonal change of dissolved inorganic nitrogen (DIN) and NO3- -N, NH4+ -N in interstitial water varied similarly and also got their maximum concentration in October 2004. The concentration of NO2- -N in overlying and interstitial waters increased from spring to winter. The average fluxes of NH4+ -N, NO3- -N, NO2- -N were separately 5.46, -5.04, 8.71 micromol/(m2 x d). And NO2- -N was the most diffusive flux component in net-cage culture area of Tangdao Bay.
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PMID:[Diffusive fluxes of dissolved inorganic nitrogen across sediment-water interface in net-cage culture area of Tangdao Bay]. 1763 69

Goals are (1) to selectively synthesize metallic nitride fullerenes (MNFs) in lieu of empty-cage fullerenes (e.g., C60, C70) without compromising MNF yield and (2) to test our hypothesis that MNFs possess a different set of optimal formation parameters than empty-cage fullerenes. In this work, we introduce a novel approach for the selective synthesis of metallic nitride fullerenes. This new method is "Chemically Adjusting Plasma Temperature, Energy, and Reactivity" (CAPTEAR). The CAPTEAR approach with copper nitrate hydrate uses NOx vapor from NOx generating solid reagents, air, and combustion to "tune" the temperature, energy, and reactivity of the plasma environment. The extent of temperature, energy, and reactive environment is stoichiometrically varied until optimal conditions for selective MNF synthesis are achieved. Analysis of soot extracts indicate that percentages of C60 and Sc3N@C80 are inversely related, whereas the percentages of C70 and higher empty-cage C2n fullerenes are largely unaffected. Hence, there may be a "competitive link" in the formation and mechanism of C60 and Sc3N@C80. Using this CAPTEAR method, purified MNFs (96% Sc3N@C80, 12 mg) have been obtained in soot extracts without a significant penalty in milligram yield when compared to control soot extracts (4% Sc3N@C80, 13 mg of Sc3N@C80). The CAPTEAR process with Cu(NO3)2.2.5H2O uses an exothermic nitrate moiety to suppress empty-cage fullerene formation, whereas Cu functions as a catalyst additive to offset the reactive plasma environment and boost the Sc3N@C80 MNF production.
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PMID:Chemically adjusting plasma temperature, energy, and reactivity (CAPTEAR) method using NOx and combustion for selective synthesis of Sc3N@C80 metallic nitride fullerenes. 1805 69

Dual shell-like nanoscopic magnetic clusters featuring a polynuclear nickel(II) framework encapsulating that of lanthanide ions (Ln = La, Pr, and Nd) were synthesized using Ni(NO3)(2).6H2O, Ln(NO3)(3).6H2O, and iminodiacetic acid (IDA) under hydrothermal conditions. Structurally established by crystallographic studies, these clusters are [La20Ni30(IDA)30(CO3)6(NO3)6(OH)30(H2O)12](CO3)(6).72H2O (1), [Ln20Ni21(C4H5NO4)21(OH)24(C2H2O3)6(C2O4)3(NO3)9(H2O)12](NO3)9.nH2O [C2H2O3 is the alkoxide form of glycolate; Ln = Pr (2), n = 42; Nd (3), n = 50], and {[La4Ni5Na(IDA)5(CO3)(NO3)4(OH)5(H2O)5][CO3].10H2O} infinity (4). Carbonate, oxalate, and glycolate are products of hydrothermal decomposition of IDA. Compositions of these compounds were confirmed by satisfactory elemental analyses. It has been found that the cluster structure is dependent on the identity of the lanthanide ion as well as the starting Ln/Ni/IDA ratio. The cationic cluster of 1 features a core of the Keplerate type with an outer icosidodecahedron of Ni(II) ions encaging a dodecahedral kernel of La(III). Clusters 2 and 3, distinctly different from 1, are isostructural, possessing a core of an outer shell of 21 Ni(II) ions encapsulating an inner shell of 20 Ln(III) ions. Complex 4 is a three-dimensional assembly of cluster building blocks connected by units of Na(NO3)/La(NO3)3; the structure of the building block resembles closely that of 1, with a hydrated La(III) ion internalized in the decanuclear cage being an extra feature. Magnetic studies indicated ferromagnetic interactions in 1, while overall antiferromagnetic interactions were revealed for 2 and 3. The polymeric, three-dimensional cluster network 4 displayed interesting ferrimagnetic interactions.
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PMID:Dual shell-like magnetic clusters containing Ni(II) and Ln(III) (Ln = La, Pr, and Nd) ions. 1832 93

The reaction of Cu(ClO4)2. 6H2O with t-BuP(O)(OH)2 and 3,5-(CF3)2PzH in the presence of triethylamine afforded the dodecanuclear cage ([Et3NH]2[Cu12(mu-3,5-(CF3)2Pz)6(mu3-OH)6(mu-OH)3(mu3-t-BuPO3)2(mu6-t-BuPO3)3][t-BuPO2OH][C6H5CH3]2) (2). The molecular structure of this cage revealed that it possesses a barrel-shaped architechture. The cage structure is built by the cumulative coordination action of phosphonate, hydroxide, and pyrazolyl ligands. A similar reaction involving Cu(NO3)2. 3H2O, t-BuP(O)(OH)2, 3,5-dimethylpyrazole, and triethylamine afforded another dodecanuclear cage [Cu12(mu-DMPz)8(eta1-DMPzH)2(mu4-O)2(mu3-OH)4(mu3- t-BuPO3)4].3MeOH (3). The latter is crown-shaped and is built by the coordination of pyrazole, pyrazolyl, phosphonate, hydroxide, oxide, and methanol ligands. Both of the dodecanuclear cages are efficient nucleases in the presence of magnesium monoperoxyphthalate.
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PMID:Barrel- and crown-shaped dodecanuclear copper(II) cages built from phosphonate, pyrazole, and hydroxide ligands. 1848 17

A per-O-methylated beta-cyclodextrin dimer, Py2CD, was conveniently prepared via two steps: the Williamson reaction of 3,5-bis(bromomethyl)pyridine and beta-cyclodextrin (beta-CD) yielding 2A,2'A-O-[3,5-pyridinediylbis(methylene)bis-beta-cyclodextrin (bisCD) followed by the O-methylation of all the hydroxy groups of the bisCD. Py2CD formed a very stable 1:1 complex (Fe(III)PCD) with [5,10,15,20-tetrakis(p-sulfonatophenyl)porphinato]iron(III) (Fe(III)TPPS) in aqueous solution. Fe(III)PCD was reduced with Na2S2O4 to afford the Fe (II)TPPS/Py2CD complex (Fe(II)PCD). Dioxygen was bound to Fe(II)PCD, the P(1/2)(O2) values being 42.4 +/- 1.6 and 176 +/- 3 Torr at 3 and 25 degrees C, respectively. The k(on)(O2) and k(off)(O2) values for the dioxygen binding were determined to be 1.3 x 10(7) M(-1) s(-1) and 3.8 x 10(3) s(-1), respectively, at 25 degrees C. Although the dioxygen adduct was not very stable (K(O2) = k(on)(O2)/k(off)(O2) = 3.4 x 10(3) M(-1)), no autoxidation of the dioxygen adduct of Fe(II)PCD to Fe(III)PCD was observed. These results suggest that the encapsulation of Fe (II)TPPS by Py2CD strictly inhibits not only the extrusion of dioxygen from the cyclodextrin cage but also the penetration of a water molecule into the cage. The carbon monoxide affinity of Fe(II)PCD was much higher than the dioxygen affinity; the P(1/2)(CO), k(on)(CO), k(off)(CO), and K(CO) values being (1.6 +/- 0.2) x 10(-2) Torr, 2.4 x 10(6) M(-1) s(-1), 4.8 x 10(-2) s(-1), and 5.0 x 10(7) M(-1), respectively, at 25 degrees C. Fe(II)PCD also bound nitric oxide. The rate of the dissociation of NO from (NO)Fe(II)PCD ((5.58 +/- 0.42) x 10(-5) s(-1)) was in good agreement with the maximum rate ((5.12 +/- 0.18) x 10(-5) s(-1)) of the oxidation of (NO)Fe(II)PCD to Fe(III)PCD and NO3(-), suggesting that the autoxidation of (NO)Fe(II)PCD proceeds through the ligand exchange between NO and O2 followed by the rapid reaction of (O2)Fe(II)PCD with released NO, affording Fe(II)PCD and the NO3(-) anion inside the cyclodextrin cage.
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PMID:A supramolecular receptor of diatomic molecules (O2, CO, NO) in aqueous solution. 1851 Mar 26


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