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Query: UNIPROT:Q00604 (X-linked)
 16,883 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

Nuclease digestion of isolated nuclei was used to test whether differential chromatin structure exists for a dosage-compensated heat shock gene in Drosophila pseudoobscura. No differences were observed in nuclease sensitivity at this locus in males and females, either under heat shock or non-heat shock conditions, using micrococcal nuclease or DNase I. Although the higher level of nuclease sensitivity characterized by the induced state was removed when nuclei were prepared in high salt (0.45 M sodium chloride), this procedure did not reveal covert differences in X-linked chromatin structure between males and females. However, a clear difference was observed in the nuclease sensitivity at low level (uninduced) and high level (heat-induced) expression of the X-linked heat shock gene, suggesting that the same gene transcribed at two steady state rates can have different chromatin structures.
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PMID:Chromatin structure and transcriptional activity of an X-linked heat shock gene in drosophila pseudoobscura. 631 15

Trinucleotide CAG repeats in the X-linked human androgen receptor gene (HUMARA) have proved a useful means of determining X chromosome haplotypes, and when combined with methylation analysis of nearby cytosine residues permits identification of non-random X inactivation in tumors of women. Co-amplification of two alleles in a heterozygote generates PCR products which differ in the number of CAG units, and thus their melting and secondary structure characteristics. We have shown that under optimal conditions amplification efficiency of two HUMARA alleles is near-equivalent, generating PCR products in a ratio proportional to that of the genomic template. In contrast, reduction of template quantity, damage of template by ultraviolet irradiation or addition of monovalent salts (sodium chloride, sodium acetate or ammonium acetate) produces highly variable imbalances of allelic PCR products, with a strong tendency to preferentially amplify lower molecular weight alleles. Variability and biasing was diminished by substitution of 7-deaza-2'-dGTP for dGTP during amplification, an intervention which reduces stability of intramolecular and intermolecular GC base pairing. We conclude that DNA which is scanty, damaged or salt contaminated may display amplification bias of GC-rich PCR targets, potentially confounding accurate interpretation or reproducibility of assays which require co-amplification of alleles.
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PMID:PCR bias in amplification of androgen receptor alleles, a trinucleotide repeat marker used in clonality studies. 775 34

We report molecular dynamics simulations of aqueous sodium chloride solutions at T = 298 K and p = 1 bar in order to investigate the salt concentration dependence of the dielectric permittivity, the structure, and the dynamical properties. Different models were applied up to 7 m salt concentration: the Drude oscillator model with a negative Drude particle (SWM4-NDP), the TIP4P/2005-Reif nonpolarizable model, and an electronic continuum polarizable model (MDEC). Both SWM4-NDP and MDEC polarizable models were able to quantitatively reproduce the concentration dependence of the dielectric permittivity of NaCl aqueous solutions. On the contrary, the nonpolarizable TIP4P/2005 water model failed to quantitatively predict this concentration dependence. In contrast with the SWM4-NDP model, the MDEC model was unable to capture the concentration dependence of the structure and the dynamics of NaCl solutions. The SWM4-NDP model proved to be the most efficient polarizable model to reproduce quantitatively the concentration dependence of the dielectric permittivity, the dynamics, and the structure of NaCl solutions.
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PMID:Concentration dependence of the dielectric permittivity, structure, and dynamics of aqueous NaCl solutions: comparison between the Drude oscillator and electronic continuum models. 2466 Oct 6