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Query: UNIPROT:P50583 (asymmetrical)
 12,197 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

The titanium dinitrogen complex, [[(Me(2)N)C(N(i)Pr)(2)]( 2)Ti](2)(N(2)) (2), was synthesized by reduction of the dichloride precursor, [(Me(2)N)C(N(i)Pr)(2)](2)TiCl(2) (1). The dinitrogen complex reacts with phenyl azide to yield the titanium imido complex, [(Me(2)N)C(N(i)Pr)(2)](2)TiNPh (3). The fluxional behavior of the guanidinate ligands in compounds 1-3 was investigated using variable temperature and two-dimensional NMR techniques; guanidinate ligand rotation and racemization reactions were observed. Rearrangement of the guanidinate ligand to an asymmetrical bonding mode utilizing the dimethylamino and amide-nitrogen atoms is observed in the bridging oxo and sulfido derivatives (4 and 5). These compounds are formed by the reactions of 2 with pyridine N-oxide and propylene sulfide, respectively. The ligand rearrangement was observed to be reversible for the bridging sulfido complex 5; the structure of this compound is sensitive to temperature and solvent. The solid-state and solution structures of compounds 1-5 are discussed.
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PMID:Reactivity of a titanium dinitrogen complex supported by guanidinate ligands: investigation of solution behavior and a novel rearrangement of guanidinate ligands. 1175 77

The structure of a 23 nt RNA sequence, rGGACCCGGGCUCAACCUGGGUCC, was elucidated using homonuclear NMR, distance geometry and restrained molecular dynamics. This RNA is analogous to residues 612-628 of the Escherichia coli 16S rRNA. The structure of the RNA reveals the presence of a pentaloop closed by a duplex stem in typical A-form conformation. The loop does not form a U-turn motif, as previously predicted. A non-planar A.C.A triple base interaction (hydrogen bonds A13 NH6-C10 O2 and C10 N3-A14 NH6) stabilizing the loop structure is inferred from structure calculations. The CUCAA loop structure is asymmetrical, characterized by a reversal of the phosphodiester backbone at the UC step (hydrogen bond C12 NH4-C10 O2') and 3'-stacking within the CAA segment. Loop base U11 is oriented towards the major groove and the consecutive adenosines on the 3'-end of the loop are well stacked, exposing their reactive functional groups in the minor groove defined by the duplex stem. The solution structure of the loop resembles that seen in the 3.3 A X-ray structure of the entire 30S subunit, where the analogous loop interacts with a ribosomal protein and a receptor RNA helix.
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PMID:NMR structure of a ribosomal RNA hairpin containing a conserved CUCAA pentaloop. 1181 46

Dipole parallel-alignment of organic molecular crystals of azines has been achieved with a design that was based on the hypothesis that the azine bridge is a conjugation stopper. This hypothesis has now been tested in detail, and (1)H and (13)C NMR spectroscopic data of symmetric and asymmetric acetophenone azines are presented in support of this design concept. Previous structural, ab initio, and electrochemical studies have shown that the azine bridge largely inhibits through-conjugation in molecules with the general structure DPhC(Me) [double bond] N [bond] N [double bond] C(Me)PhA, where D is a donor group and A is an acceptor group. NMR spectroscopy is an excellent tool to probe the degree of conjugation through the azine bridge. The NMR results reported here for nine symmetrical and 18 asymmetrical azines show in a compelling fashion that the hypothesis holds. Varying the donor group does not change the chemical shifts of the aromatic hydrogen and carbon atoms on the acceptor-substituted phenyl ring. Likewise, varying the acceptor group does not change the chemical shifts of the atoms in the donor-substituted phenyl ring.
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PMID:The azine bridge as a conjugation stopper: an NMR spectroscopic study of electron delocalization in acetophenone azines. 1187 71

The reaction of [Sn(NMe(2))(2)](2) (1) with 4 equiv of HOCH(2)CMe(3) (HONep) leads to the isolation of [Sn(ONep)(2)](infinity) (2). Each Sn atom is four coordinated with mu-ONep ligands bridging the metal centers; however, if the free electrons of the Sn(II) metal center are considered, each Sn center adopts a distorted trigonal bipyramidal (TBP) geometry. Through (119)Sn NMR experiments, the polymeric compound 2 was found to be disrupted into smaller oligomers in solution. Titration of 2 with H(2)O led to the identification of two unique hydrolysis products characterized by single-crystal X-ray diffraction as Sn(5)(mu(3)-O)(2)(mu-ONep)(6) (3) and Sn(6)(mu(3)-O)(4)(mu-ONep)(4) (4). Compound 3 consists of an asymmetrical molecule that has five Sn atoms arranged in a square-based pyramidal geometry linked by four basal mu-ONep ligands, two facial mu(3)-O, and two facial mu-ONep ligands. Compound 4 was solved in a novel octahedral arrangement of six Sn cations with an asymmetric arrangement of mu(3)-O and mu-ONep ligands that yields two square base pyramidal and four pyramidal coordinated Sn cations. These compounds were further identified by multinuclear ((1)H, (13)C, (17)O, and (119)Sn) solid-state MAS and high resolution, solution NMR experiments. Because of the complexity of the compounds and the accessibility of the various nuclei, 2D NMR experiments were also undertaken to elucidate the solution behavior of these compounds. On the basis of these studies, it was determined that while the central core of the solid-state structures of 3 and 4 is retained, dynamic ligand exchange leads to more symmetrical molecules in solution. Novel products 3 and 4 lend structural insight into the stepwise hydrolysis of Sn(II) alkoxides.
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PMID:Hydrolysis of tin(II) neo-pentoxide: syntheses, characterization, and X-ray structures of [Sn(ONep)(2)](infinity), Sn(5)(mu(3)-O)(2)(mu-ONep)(6), and Sn(6)(mu(3)-O)(4)(mu-ONep)(4) where ONep = OCH(2)CMe(3). 1197 29

In a recent paper, we reported on the base-catalyzed rearrangement of bis-propargylic sulfoxides that eventually leads to polycyclic products featuring an unsaturated, cyclic substituent such as cyclohexenyl or phenyl. Due to steric constraints, the latter is positioned roughly perpendicularly to the tricyclic core, and in most cases, two rotamers can be observed in the ground state. In the present work, we report on the synthesis and the products of both symmetrical and asymmetrical starting materials. We also measure, by NMR techniques, the rotation rate of the side chain for several such polycyclic sulfoxides. The barriers for this process, which is similar to a biphenyl rotation, are very strongly dependent on the nature of the substrate, ranging between <7 and 21.0 kcal.mol(-1) for sulfoxides with two five-membered rings and two seven-membered rings, respectively. These barriers can be successfully simulated by molecular-mechanics calculations, and the geometries of the transition states are discussed.
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PMID:Dynamic NMR study of the rotation around "biphenyl-type" bonds in polycyclic sulfoxides. 1200 36

2,4-Diaryl- and 2,4-diferrocenyl-1,3-dithiadiphosphetane disulfide dimers (RP(S)S)(2) (R = Ph (1a), 4-C(6)H(4)OMe (1b), FeC(10)H(9) (Fc) (1c)) react with a variety of alcohols, silanols, and trialkylsilyl alcohols to form new dithiophosphonic acids in a facile manner. Their corresponding salts react with chlorogold(I) complexes in THF to produce dinuclear gold(I) dithiophosphonate complexes of the type [AuS(2)PR(OR')](2) in satisfactory yield. The asymmetrical nature of the ligands allows for the gold complexes to form two isomers (cis and trans) as verified by solution (1)H and (31)P[(1)H] NMR studies. The X-ray crystal structures of [AuS(2)PR(OR')](2) (R = Ph, R' = C(5)H(9) (2); R = 4-C(6)H(4)OMe, R' = (1S,5R,2S)-(-)-menthyl (3); R = Fc, R' = (CH(2))(2)O(CH(2))(2)OMe (4)) have been determined. In all cases only the trans isomer is obtained, consistent with solid state (31)P NMR data obtained for the bulk powder of 3. Crystallographic data for 2 (213 K): orthorhombic, Ibam, a = 12.434(5) A, b = 19.029(9) A, c = 11.760(4) A, V = 2782(2) A(3), Z = 4. Data for 3 (293 K): monoclinic, P2(1), a = 7.288(2) A, b = 12.676(3) A, c = 21.826(4) A, beta = 92.04(3) degrees, V = 2015.0(7) A(3), Z = 2. Data for 4 (213 K): monoclinic, P2(1)/n, a = 11.8564(7) A, b = 22.483(1) A, c = 27.840(2) A, beta = 91.121(1) degrees, V = 7419.8(8) A(3), Z = 8. Moreover, 1a-c react with [Au(2)(dppm)Cl(2)] to form new heterobridged trithiophosphonate complexes of the type [Au(2)(dppm)(S(2)P(S)R)] (R = Fc (12)). The luminescence properties of several structurally characterized complexes have been investigated. Each of the title compounds luminesces at 77 K. The results indicate that the nature of Au...Au interactions in the solid state has a profound influence on the optical properties of these complexes.
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PMID:Dinuclear gold(I) dithiophosphonate complexes: synthesis, luminescent properties, and X-ray crystal structures of [AuS(2)PR(OR')](2) (R = Ph, R' = C(5)H(9); R = 4-C(6)H(4)OMe, R' = (1S,5R,2S)-(--)-menthyl; R = Fc, R' = (CH(2))(2)O(CH(2))(2)OMe). 1218 78

Monosubstituted [M(N)Cl(2)(POP)] [M = Tc, 1; Re, 2] and [M(N)Cl(2)(PNP)] [M = Tc, 3; Re, 4] complexes were prepared by reaction of the precursors [M(N)Cl(4)](-) and [M(N)Cl(2)(PPh(3))(2)] (M = Tc, Re) with the diphosphine ligands bis(2-diphenylphosphinoethyl)ether (POP) and bis(2-diphenylphosphinoethyl)methoxyethylamine (PNP) in refluxing dichloromethane/methanol solutions. In these compounds, the diphosphine acted as a chelating ligand bound to the metal center through the two phosphorus atoms. Considering also the weak interaction of the heteroatom (N or O) located in the middle of the carbon backbone connecting the two P atoms, we found that the coordination arrangement of the diphosphine ligand could be viewed as either meridional (m) or facial (f), and the resulting geometry as pseudooctahedral. The heteroatom of the diphosphine ligand was invariably located trans to the nitrido linkage, as established by X-ray diffraction analysis of the representative compounds 2m and 4f. Density functional theoretical calculations showed that in POP-type complexes the mer form is favored by approximately 6 kcal mol(-1), whereas mer and fac isomers are almost isoenergetic in PNP-type complexes. A possible role of noncovalent interactions between the phosphinic phenyl substituents in stabilizing the fac-isomer was also highlighted. The existence of fac-mer isomerism in this class of complexes was attributed to the strong tendency of the two phosphorus atoms to occupy a reciprocal trans-position within the pseudooctahedral geometry. The switching of P atoms between cis- and trans-configurations was confirmed by the observation that the fac isomers, 1f and 2f, were irreversibly transformed, in solution, into the corresponding mer isomers, 1m and 2m, thus suggesting that fac complexes are more reactive species. Theoretical calculations supported this view by showing that the lowest unoccupied orbitals of the fac isomers are more accessible to a nucleophilic attack with respect to those of the mer ones. Furthermore, the large participation of the Cl orbitals to the HOMO, which is a metal-ligand pi* antibonding in the complex basal plane, shows that the Tc-Cl bonds are labile. As a consequence, facial isomers could be considered as highly electrophilic intermediates that were selectively reactive toward substitution by electron-rich donor ligands. Experimental evidence was in close agreement with this description. It was found that fac-[M(N)Cl(2)(PXP)] complexes easily underwent ligand-exchange reactions with bidentate donor ligands such as mercaptoacetic acid (NaHL(1)), S-methyl 2-methyldithiocarbazate (H(2)L(2)), diethyldithiocarbamate sodium salt (NaL(3)), and N-acetyl-L-cysteine (H(2)L(4)) to afford stable asymmetrical heterocomplexes of the type fac-[M(N)(L(n))(POP)](+/0) (5-8) and fac-[M(N)(L(n))(PNP)](+/0) (9-14) comprising two different polydentate chelating ligands bound to the same metal center. In these reactions, the bidentate ligand replaced the two chloride atoms on the equatorial plane of the distorted octahedron, leaving the starting fac-[M(N)(PXP)](2+) (X = O, N) moieties untouched. No formation of the corresponding symmetrical complexes containing two identical bidentate ligands was detected over a broad range of experimental conditions. Solution-state NMR studies confirmed that the structure in solution of these heterocomplexes was identical to that established in the solid state by X-ray diffraction analysis of the prototype complexes fac-[M(N)(HL(2))(POP)][BF(4)] [M = Tc, 7; Re, 8] and fac-[Tc(N)(HL(2))(PNP)][BF(4)], 11. In conclusion, the novel metal fragment fac-[M(N)(PXP)](2+) could be utilized as an efficient synthon for the preparation of a large class of asymmetrical, nitrido heterocomplexes incorporating a particular diphosphine ligand and a variety of bidentate chelating molecules.
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PMID:Chemistry of the strong electrophilic metal fragment [(99)Tc(N)(PXP)](2+) (PXP = diphosphine ligand). A novel tool for the selective labeling of small molecules. 1223 61

Five carotenoids existing in the purple bacterium of Rhodobium marinum, lycopene, anhydrorhodovibrin, spirilloxanthin, rhodopin, and rhodovibrin, were isolated and purified. Their configurations in the chromophore region and conformations of the terminal part were determined by 1D, 2D 1H and 13C NMR spectroscopy. The semiempirical quantum chemical calculation AM1 was subsequently performed using the rough 3-D structures established by NOE correlations as an initial input. The final optimized structures are coincident with 1H-1H NOE correlations and match with the X-ray crystallographic data of carotenoids. The calculation results show that chemically symmetrical carotenoids have a Ci point group. The Ci point group of molecules was destroyed by asymmetrical terminal part although the polyene chain still keeps it roughly. The polyene region of investigated carotenoids are in all-trans with slightly twisted in-plane and slight out-plane forming s-shape carbon backbone due to the spatial interaction of the methyl groups. Terminal parts, on the other hand, have several stable conformers due to the freely rotatable single bonds, but they prefer to take extended conformations.
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PMID:Conformation analysis of carotenoids in the purple bacterium Rhodobium marinum based on NMR spectroscopy and AM1 calculation. 1244 27

The reverse transcriptase (RT) of HIV which has been inhibited by the incorporation of AZT into the primer strand is subject to a deblocking reaction by cellular ATP. This reaction yields unblocked primer plus the dinucleoside tetraphosphate, AZTp(4)A. In the present study, we report that AZTp(4)A is an excellent substrate for the enzyme Ap(4)A hydrolase (asymmetrical dinucleoside tetraphosphatase, EC 3.6.1.17), an enzyme that is widely distributed in many cell types. Progress of the reaction has been monitored by 31P NMR, and it was found that hydrolysis results in the production of AZTTP:ATP in a 7:1 ratio. The AZTp(4)A was also hydrolyzed at a rate 1.8-fold more rapidly than Ap(4)A. Spectrophotometric assays yielded Michaelis constants of 2.35 and 0.71 microM for Ap(4)A and AZTp(4)A, respectively. It, therefore, appears that Ap(4)A hydrolase can play a useful role in the regeneration of the AZTTP, the active form of AZT, for the inhibition of HIV RT.
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PMID:Metabolic transformation of AZTp4A by Ap4A hydrolase regenerates AZT triphosphate. 1276 70

On standing in organic solvents containing traces of water, C3 and C1 isomers of C60F36 slowly convert to C1 isomers of C60F35OH. Both fluorofullerenols eliminate HF during EI mass spectrometry to give C60F34O epoxides, one fullerenol being much less stable than the other to the extent that the mass spectrum shows only the epoxide. Both C60F35OH isomers have C1 symmetry, one being identified by the remarkable linear relationship between chemical shifts in its 19F NMR spectrum and those in the spectrum of C1 C60F36; the spectrum of the other shows the pattern of C3 C60F36 rendered asymmetrical by the replacement of one F by OH. The reactions are facilitated by the presence of isolated double bonds, and provide the first proven examples of an SN2' reaction of a fullerene derivative. Our observation explains why only a limited number of fluorines are readily replaced in C60F36 and why C60F18 is by contrast much more resistant to hydrolysis. We have isolated also a pure isomer of C60F36O, which is shown to be an oxahomofullerene (ether) apparently derived from C1 C60F36, and an impure fraction comprising a fourth isomer of C60F36, a trifluoromethyl derivative of C60F36, a second isomer of C60F36O, and an unknown species of 1392 u.
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PMID:In the first proven SN2' fullerene reaction, both C3 and C1 C60F36 hydrolyse to C1 isomers of C60F35OH that eliminate HF to give epoxides C60F34O; C60F36O oxides are shown to be ethers, and a fourth isomer of C60F36 exists. 1292 43


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