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Query: UNIPROT:P06889 (Mol)
 630,302 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

A new analytical reagent 5-(p-aminobenzylidene)-rhodanine (ABR) was synthesized. The acidic dissociation constant of ABR has been determined. The properties, the acid-base behavior of ABR and the reactions of ABR with metallic ions have been studied. The color reactions of the reagent with Pd(II), Au(III), Ag(I), Ru(III), Hg(II) and Cu(II) are studied in detail. The composition of Pd(II)-ABR, Au(III)-ABR and Ag(I)-ABR complexes were discussed.
Spectrochim Acta A Mol Biomol Spectrosc 2003 Feb
PMID:Studies on the synthesis of 5-(p-aminobenzylidene)-rhodanine and its properties. 1252 35

Biochemical measurements in the sentinel clam Chamaelea gallina have been used as biomarkers of marine pollution. In this study, S9, cytosolic fractions (CF), and microsomal fractions (MF) prepared from unexposed clams and clams exposed to model pollutants were used to activate 2-aminoanthracene (2-AA) and 2-acetylaminofluorene (AAF) to mutagens in Salmonella typhimurium strain BA149, which overexpresses O-acetyltransferase. Arylamine activation was similar with subcellular fractions from unexposed and Aroclor 1254-exposed clams, but decreased with fractions from As(III)- and Cu(II)-exposed clams. Bioactivation of arylamines by CF was higher than by MF, and higher with NADH than with NADPH as the reducing agent. alpha-Naphthoflavone inhibited AAF activation by CF and MF, but increased 2-AA activation nearly twofold. In contrast to the results with arylamine activation, benzo[a]pyrene hydroxylase (BPH) activity increased twofold in fractions from Aroclor 1254- and Cu(II)-exposed clams. Activation of 2-AA was also evaluated using S9 fractions from clams sampled at littoral sites with different pollutant levels. Compared to a reference site, lower 2-AA bioactivation and higher BPH activity were found in clams containing high levels of copper and organic contaminants, although the differences were not statistically significant. While these findings agree with the results of the model Cu(II) exposure, the effects of other pollutants cannot be ruled out. The results of the study demonstrate that arylamine activation by clams is not preferentially catalyzed by microsomal monooxygenases but by unknown cytosolic system(s), and that bioactivation of 2-AA and AAF appears to occur by different pathways.
Environ Mol Mutagen 2003
PMID:Mutagenic activation of arylamines by subcellular fractions of Chamaelea gallina clams exposed to environmental pollutants. 1255 92

Although techniques for the simulation of biomolecules, such as proteins and RNAs, have greatly advanced in the last decade, modeling complexes of biomolecules with metal ions remains problematic. Precise calculations can be done with quantum mechanical methods but these are prohibitive for systems the size of macromolecules. More qualitative modeling can be done with molecular mechanical potentials but the parametrization of force fields for metals is often difficult, particularly if the bonding between the metal and the groups in its coordination shell has significant covalent character. In this paper we present a method for deriving bond and bond-angle parameters for metal complexes from experimental bond and bond-angle distributions obtained from the Cambridge Structural Database. In conjunction with this method, we also introduce a non-standard energy term of gaussian form that allows us to obtain a stable description of the coordination about a metal center during a simulation. The method was evaluated on Fe(II)-porphyrin complexes, on simple Cu(II) ion complexes and a number of complexes of the Pb(II) ion.
J Comput Aided Mol Des
PMID:Parametrization of a force field for metals complexed to biomacromolecules: applications to Fe(II), Cu(II) and Pb(II). 1260 55

Solvatochromic mixed ligand complexes of copper(II) with malonate and diamine derivatives, Cu(n)(RMal)(diam)(n)X(m) (where n=1 or 2, m=1-4, RMal, malonic acid (H(2)Mal), diethylmalonate (HDEtMal) or diethylethoxyethylenemalonate (DEtEMal), and diam, ethylenediamine (en), 1,3-propylenediamine (1,3-pn), N,N,N'-trimethylethylenediamine (Me(3)en), N,N,N'-triethylethylenediamine (Et(3)en), N,N,N',N'-tetramethylethylenediamine (Me(4)en), N,N,N',N'-tetramethylpropylenediamine (Me(4)pn), or N-methyl-1,4-diazacycloheptane (medach); and X=ClO(4)(-) or Cl(-)), has been synthesized and characterized by spectroscopic, magnetic, molar conductance and electrochemical measurements. The mass spectra along with the analytical data of the complexes show peaks with m/e corresponding to a bridged binuclear structure for the chloride complexes, while perchlorate complexes showed either mononuclear structure for DEtMal and DEtEMal or bridged binuclear structure for Mal complexes. These results correspond to IR spectral data, which indicated that the modes of ester and carboxylato coordination sites are mono- and/or bidentate. The d-d absorption bands in weak donor solvents suggest square-planar and distorted square pyramidal-trigonal bipyramid geometries for the perchlorate and chloride complexes; respectively. On the other hand, an octahedral structure is identified for complexes in strong donor solvents. Perchlorate complexes show a drastic color change from violet to green as the donation ability of solvent increases, whereas chloride complexes are highly affected by the acceptor properties of the solvent. Cyclic voltammetric measurements on the complexes, proposed a quasi-reversible or irreversible and mainly diffusion controlled reduction process. Such behavior has been explained according to the ECE mechanism. A linear correlation has been found between the Cu(II) reduction potential and the spectral data. Molecular orbital calculations were performed for the ligands on the bases of PM3 level and the results corresponded to the experimental data. The data are discussed in terms of chromotropic concept and its applications as a Lewis acid-base color indicator.
Spectrochim Acta A Mol Biomol Spectrosc 2003 Apr
PMID:Spectral, electrochemical and molecular orbital studies on solvatochromic mixed ligand copper(II) complexes of malonate and diamine derivatives. 1265 6

5,15-di(4-hydroxyphenyl)-10,20-di(hexadecyloxyphenyl) porphyrin P was solubilized in nonionic polyoxyethylene(9.5) octylphenol (Triton X-100 or TX-100) micelle solutions. By means of analyzing the UV-visible and fluorescence spectra of the synthesized amphiphilic porphyrin P in different solvent environments, and the relationship between the solubilizing location of the porphyrins in TX-100 micelle and the microenvironment polarity, P is shown to involve in a transfer process for the porphyrin moiety from inner to the outer surface of TX-100 micelle as the pH is increased. The kinetic study of porphyrin incorporate with Cu(II) shows that metalation rate of porphyrin increases with the pH increasing, indicating that metalation rate could be controlled by changing pH.
Spectrochim Acta A Mol Biomol Spectrosc 2003 Jan 15
PMID:UV-visible and fluorescence spectral study on a pH controlled transfer process of an amphiphilic porphyrin in nonionic micelle. 1268 94

In the past, the method of reconstitution was used to investigate the interaction between metalloenzymes (containing Zn(II)) and metal ions. In this paper, electron paramagnetic resonance (EPR) has been employed to firstly study the direct interactions between Bacillus subtilis neutral proteinase (BSNP), nuclease P1 and Cu(II) ions added in aqueous solution, respectively. These results show that a dynamic equilibrium exists between the Zn(II) in the active site of native enzymes and the added Cu(II), the added Cu(II) partly replaces the Zn(II), forming Cu(II)-enzyme derivatives. As a result, the activity of the native enzymes is influenced. The influences of pH value on this kind of interaction have also been investigated, and the results demonstrate that the change of pH value has little influence on the system of nuclease P1, but has remarkable influence on BSNP. We firstly obtained the EPR spectra for Cu(II)-enzyme derivatives. In addition, the derivative of Cu(II)-BSNP exists in the solution with two different conformations (I type g(parallel)=2.34, A(parallel) (mT)=13.4; II type g(parallel)=2.25, A(parallel) (mT)=16.1), and this two conformations exchanged each other depending on pH.
Spectrochim Acta A Mol Biomol Spectrosc 2003 Jun
PMID:Applications of electron paramagnetic resonance spectroscopy to study interactions of metalloenzymes with Cu(II) ions. 1273 61

Dimeric (hydrated and anhydrated) complexes of Cu(II) with N,N'-bis(3-carboxy-1-oxo-2-prop-2-enyl)ethylenediamine(BCOPENH(2), A) and N,N'-bis(2-carboxy-1-oxo-phenylenyl)ethylenediamine(BCOPHENH(2), B) have been prepared and characterised by elemental analysis, magnetic susceptibility measurements, EPR, thermal and spectral (IR, UV/Vis) studies. EPR parameters and magnetic behaviour indicates that the complexes are antiferromagnetic in nature and most likely adopt the typical carboxylate cage structure. Interesting amide bonding patterns have been observed and various EPR parameters have been evaluated on the basis of these studies, tentative probable structures of the complexes have been proposed.
Spectrochim Acta A Mol Biomol Spectrosc 2003 Oct
PMID:Spectral studies of dimeric copper(II) complexes of acid amide derivatives as models for type III copper enzymes. 1449 38

A copper-doped LiRbB4O7 crystal was grown by the Czochralski technique. Powder X-ray, EPR and optical absorption studies were carried out. The results and discussion of the copper doped LiRbB4O7 crystal indicate that the copper ions enter the host lattice by replacing Li ions. The Cu(II) ion spectrum is characteristic of a tetragonally elongated octahedral site. Lattice and spin-Hamiltonian parameters were evaluated. The bonding parameters indicate that the bonding between copper and the ligands is partly covalent.
Spectrochim Acta A Mol Biomol Spectrosc 2003 Dec
PMID:Spectroscopic studies of a LiRbB4O7:Cu(II) crystal grown by the Czochralski technique. 1460 29

EPR of Cu(II) doped, low symmetry Co(II)-thiabendazole complex [Co(tbz)2(NO3)(H2O)](NO3) is investigated at 300 K. The spin Hamiltonian parameters are found to be orthorhombic with g33=2.305, g22=2.1351, g11=2.0626 and A33=147.0 x 10(-4), A22=33.5 x 10(-4) and A11=23.1 x 10(-4) cm(-1). Computer simulation of isofrequency plots reveal that the Cu(II) ions is substitutionally incorporated in the host lattice. Angular variation of the spectra shows the presence of two magnetic sites in the lattice. The low magnitude of A33 of the complex is rationalized in terms of admixture of d(x2-y2)/d(z2) ground state and delocalization of unpaired spin density onto the ligands.
Spectrochim Acta A Mol Biomol Spectrosc 2003 Dec
PMID:Single crystal EPR of Cu(II) doped [Co(tbz)2(NO3)(H2O)]NO3: probe into copper-thiabendazole interaction. 1460 31

The coordination behaviour of the title ligand, 5-methyl-3-formylpyrazole N(4)-benzyl-N(4)-methylthiosemicarbazone (HMPz4BM), is reported with solid state isolation of copper(II) complexes, [Cu(HMPz4BM)X2] (X = Cl, Br, NO3, ClO4 and BF4) which have been spectroscopically and structurally characterised. I.r. data for the free ligand and its Cu(II) complexes indicate that HMPz4BM exhibits a neutral NNS tridentate function via the pyrazolyl nitrogen(tertiary), azomethine nitrogen and thione sulphur. Electronic spectral data are suggestive of a square pyramidal environment for the seemingly pentacoordinated Cu(II) species. E.s.r parameters (RT and LNT) of the reported copper(II) complexes are indicative of a dx2-y2 ground state for the reported species. Cyclic voltammograms of Cu(II) complexes show a quasireversible CuII/CuIII couple and also an irreversible CuII/CuI couple. X-ray crystallography of a representative species, [Cu(HMPz4BM)(NO3)2] (C2/c, monoclinic), has unambiguously documented the conjectural findings from i.r. data that coordinating sites of the title ligand are pyrazolyl (tertiary) nitrogen, azomethine nitrogen and the thione sulphur (NNS); and the oxygen of one of the nitrate ions has occupied the basal plane; the fifth coordination position has been occupied by the oxygen of another nitrate ion in a square pyramidal geometry. The antibacterial properties of the ligand and its copper(II) complexes studied on microorganism, Staphylococcus aureus have pointed out that most of the complexes have higher activities than that of the free ligand.
Mol Cell Biochem 2003 Nov
PMID:Spectroscopic, structural and antibacterial properties of copper(II) complexes with bio-relevant 5-methyl-3-formylpyrazole N(4)-benzyl-N(4)-methylthiosemicarbazone. 1461 52


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