Gene/Protein Disease Symptom Drug Enzyme Compound
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Query: EC:6.3.5.5 (CPS)
 1,262 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

Rat liver carbamoyl phosphate synthetase I is inactivated by elastase. Addition of ATP, Mg2+, K+ and N-acetyl-L-glutamate (the physiological allosteric activator) protects entirely, whereas acetylglutamate alone speeds inactivation. We have exploited these properties to investigate binding of these ligands. Acetylglutamate binds with low affinity (KD 0.25 mM) in the absence of other ligands, and with higher affinity (KD much less than 0.1 mM) when ATP, Mg2+ and K+ are present. The apparent KD for ATP in the presence of acetylglutamate is intermediate between the KD values for the two ATP binding sites present in the enzyme; thus, binding of ATP to both sites is involved in protecting the synthetase. The data also indicate binding of MgATP and Mg2+ in the absence of acetylglutamate. The results provide further evidence for conformational changes associated with allosteric activation of the enzyme.
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PMID:Inactivation of carbamoyl phosphate synthetase (ammonia) by elastase as a probe to investigate binding of the substrates. 655 79

The glutamine- and N-acetyl-L-glutamate-dependent carbamoyl phosphate synthetase III present in liver of largemouth bass (Micropterus salmoides) has been highly purified. The properties of the enzyme are generally similar to the properties of the carbamoyl phosphate synthetase III from spiny dogfish (Squalus acanthias) previously described (Anderson, P. M. (1981) J. Biol. Chem. 256, 12228-12238). However, the bass enzyme is not subject to self-association, and the effects of urea and, particularly, trimethylamine-N-oxide, on catalytic activity are considerably reduced. Ammonia can substitute for glutamine as the nitrogen-donating substrate, but the maximum rate is lower. Carbamoyl phosphate synthetase III, like other carbamoyl phosphate synthetases, catalyzes two partial reactions, ATP synthesis from carbamoyl phosphate and ADP, and bicarbonate-dependent hydrolysis of ATP; both reactions are greatly stimulated by the presence of N-acetyl-L-glutamate. Carbamoyl phosphate synthetase III gave no detectable immunological cross-reaction with antibody to the ammonia- and N-acetyl-L-glutamate-dependent carbamoyl phosphate synthetase from rat liver mitochondria. The apparent Km value for N-acetyl-L-glutamate decreases significantly as the concentration of L-glutamine increases in the glutamine-dependent reaction, and vice versa. This effect is glutamine-specific. The apparent Km for N-acetyl-L-glutamate in the ammonia-dependent reaction is not affected by changes in ammonia concentration and the apparent Km for ammonia (8 mM) is also not affected by changes in N-acetyl-L-glutamate concentration. Studies involving inhibition of carbamoyl phosphate synthetase III by the glutamine analogs acivicin (L-(alpha S,5S)-alpha-amino-3-chloro-4,5-dihydro-5-isoxazoleacetic acid), DON (6-diazo-5-oxo-L-norleucine), and chloroketone (L-2-amino-4-oxo-5-chloropentanoic acid), provided additional evidence for significant interaction between the L-glutamine- and N-acetyl-L-glutamate-binding sites. Glutamine-dependent but not ammonia-dependent activity is inhibited by preincubating the enzyme with these analogs. This inhibition requires the presence of both MgATP and N-acetyl-L-glutamate, and is prevented by the additional presence of L-glutamine. Inhibition of the glutamine-dependent reaction by DON or chloroketone is accompanied by a decrease in the apparent Km for N-acetyl-L-glutamate in the ammonia-dependent reaction from 0.3 mM to a value which is nearly the same as that observed in the glutamine-dependent reaction when glutamine is saturating (0.015 mM).
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PMID:Glutamine- and N-acetyl-L-glutamate-dependent carbamoyl phosphate synthetase from Micropterus salmoides. Purification, properties, and inhibition by glutamine analogs. 660 5

The amount of control of the various steps involved in the citrulline synthesizing pathway in isolated rat-liver mitochondria incubated with saturating concentrations of ammonia and ornithine has been measured. The flux control coefficient of carbamoyl-phosphate synthase (ammonia) was close to one. Control exerted by other steps in the pathway, including ornithine transcarbamoylase, carbonic anhydrase. ATP production and transport of ornithine, was negligible. The high flux control coefficient of carbamoyl-phosphate synthetase is due to the low elasticity coefficient of this enzyme towards its product, intramitochondrial carbamoyl phosphate, in combination with a high elasticity coefficient of ornithine transcarbamoylase towards carbamoyl phosphate.
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PMID:Analysis of the control of citrulline synthesis in isolated rat-liver mitochondria. 674 75

The activity and stability of carbamoyl-phosphate synthetase (EC 6.3.4.16) may involve hydrophobic and ionic bonds within the enzyme. The 1-anilino-8-naphthalene sulfonate (ANS) equilibrium binding method with hydrophobic and ionic sites in enzymes, therefore, seemed suitable for the study of the acetylglutamate activation and ATP binding of the enzyme. The enzyme had a high affinity for the dye but low fluorescent yields. The enzyme had 32-88 ANS binding sites, depending on combination with ATP and acetylglutamate, and individual affinity constants for each combination. Despite the large number of binding sites, the acetylglutamate and ATP concentrations for half-maximal fluorescent change (10-40 microM) corresponded to the high-affinity bound ATP (ATPB) and acetylglutamate Kd values. In kinetic studies, ANS competed with ATP or acetylglutamate. The extrapolated ANS Ki values for ATP or acetylglutamate were both 35 microM. This value agreed with the ANS Kd value of the enzyme X ATP conformation, indicating that this was the conformation competed for by ANS. Since ANS did not influence the HCO3-dependent ATPase, ANS was concluded to compete with the ATPB binding conformation and transitional changes. This study suggests that part of the activator role of acetylglutamate may be to change the tertiary structure of the enzyme to induce hydrophobic sites which are accessible to ANS and possibly at the ATPB site.
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PMID:Fluorescent probe study with 1-anilino-8-naphthalene sulfonate on acetylglutamate activation, ATP binding and conformational changes of the rat liver carbamoyl-phosphate synthetase. 687 Dec 32

The binding of N-acetyl-L-glutamate, the physiological allosteric activator, to rat liver carbamoyl-phosphate synthetase (ammonia) was studied by techniques of rate of dialysis and of ultracentrifugation in the Airfuge. There is one binding site for acetylglutamate per enzyme monomer (Mr 165 000). K+, Mg2+ (free) and ATP were required to demonstrate binding. The concentrations of ATP required indicate that binding of ATPA (the ATP molecule that yields Pi) is needed. HCO-3 was not essential, but it enhanced binding of acetylglutamate. Glycerol also favored binding. Plots of Kd values versus the reciprocal of free Mg2+ and ATP concentrations are linear and indicate that ATPA, K+ and Mg2+ bind before acetylglutamate. In the presence of these ligands and HCO-3, ammonia increased drastically the Kd value for acetylglutamate, whereas in absence of HCO-3 ammonia had little effect. This suggests that acetylglutamate dissociates with the products and explains the higher Km for acetylglutamate in the synthetase (overall) reaction than in the ATPase (partial) reaction. In the absence of ATP acetylglutamate was bound with high affinity if ADP and carbamoyl phosphate were present. ADP or carbamoyl phosphate alone did not promote substantial binding. Binding of acetylglutamate at low concentration was slow; it was accelerated at higher concentrations of the activator. Exchange of bound acetylglutamate with acetylglutamate in solution was fast. A scheme proposed earlier for allosteric activation of the enzyme [Rubio, V., Britton, H. G. and Grisolia, S. (1983) Eur. J. Biochem. (in preparation)] is refined to incorporate the new information. Binding of ATPA, K+ and Mg2+ and formation of 'active CO2' (the central complex) are greatly favored by acetylglutamate.
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PMID:Binding of N-acetyl-L-glutamate to rat liver carbamoyl phosphate synthetase (ammonia). 688 68

A single injection of the anti-glutamine drug, acivicin (NSC 163501), in tumor-bearing rats in 30 min decreased the activities of amidophosphoribosyltransferase, carbamoyl-phosphate synthetase II and CTP synthetase to 56, 50, and 7% of those of the controls. By 1 hr the activities were down to 32, 13 and 3% and they remained low for 12 hr, after which they slowly returned towards normal range in 72 hr. The decline of the activity of CTP synthetase (a loss of 80% in 10 min) was the most rapid, and the activity only returned to 60% of the controls by 3 days after the acivicin injection. In the hepatoma the concentrations of ATP and UTP changed little, but those of GTP and CTP rapidly decreased, reaching at the lowest point 32 and 2%, respectively, of control values 2 hr after acivicin; concentrations started to rise at 12 hr, reaching normal levels by 48 hr. The drop in enzyme activities preceded the decline in the pools of GTP and CTP. The behavior of enzyme activities and nucleotide concentrations in the host liver had a pattern similar to that in the hepatoma; however, the changes were less extensive than those in the tumor. The differential response between tumor and liver is attributed, in part at least, to the tissue L-glutamine concentration which in the hepatoma (0.5 mM) was 9 times lower than in the liver (4.5mM). The selectivity of acivicin action in inhibiting glutamine-utilizing enzymes is also demonstrated by the lack of effect on aspartate carbamoyltransferase, an enzymic activity which resides in the same complex as that of carbamoyl-phosphate synthetase II. The rapid decline in the activities of glutamine-utilizing enzymes is attributed to an inactivation of the enzymes by acivicin which functions as an active sitedirected affinity analog of L-glutamine. The rapid modulation of the enzymic phenotype and ribonucleotide concentrations by acivicin provides a useful tool for elucidating the role of enzymic and nucleotide imbalance in the commitment of cancer cells to replication and in the targeting of anticancer chemotherapy.
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PMID:Rapid in vivo inactivation by acivicin of CTP synthetase, carbamoyl-phosphate synthetase II, and amidophosphoribosyltransferase in hepatoma. 707 46

A putative precursor of carbamoyl-phosphate synthase was isolated from a microsomal wash fraction and purified by high-pressure liquid chromatography. Autolytic degradation and limited proteolysis were used to characterize the putative precursor of carbamoyl-phosphate synthase and to show its similarity to the processed enzyme. The carbamoyl-phosphate synthase precursor underwent a time-dependent and concentration-dependent conversion into a dimeric or polymeric form. When labelled with 125I and incubated with foetal rat liver mitochondria the precursor was bound to the mitochondria and about 30% of the label was imported into the matrix space. This labelling required the presence of ATP and was time-dependent. Mitoplasts also imported the carbamoyl-phosphate synthase precursor. After import of the precursor, increases in carbamoyl-phosphate synthase activity could be demonstrated in foetal rat liver mitochondria.
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PMID:The import of carbamoyl-phosphate synthase into mitochondria from foetal rat liver. 711 41

The inhibition of aspartate carbamoyltransferase (ACTase) from rat Novikoff tumor by N-(phosphonacetyl)-L-aspartate (PALA) was studied in a substrate mixture permitting endogenous synthesis of carbamoyl phosphate. Among the components required for carbamoyl phosphate synthetase activity, ATP, Mg(C2H3O2)2 and KCl interfered with inhibition by PALA (with added carbamoyl phosphate). The inhibition was also decreased when the concentration of partially purified enzyme was increased. In the system dependent on carbamoyl phosphate synthetase, the 50% inhibitory concentration of PALA was lower than that in the same mixture plus 0.2 mM carbamoyl phosphate, but higher than in the usual simple assay mixture with 0.2 mM carbamoyl phosphate.
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PMID:N-(Phosphonacetyl)-L-aspartate inhibition of the enzyme complex of pyrimidine biosynthesis. 715 Mar 57

1. The relationship between intramitochondrial and extramitochondrial ATP-utilizing systems and the intramitochondrial ATP/ADP ratio was studied in isolated rat-liver mitochondria. Citrulline synthesis was used as an intramitochondrial ATP-utilizing system, and glucose-6-phosphate synthesis as an extramitochondrial ATP-utilizing system. The intramitochondrial ATP/ADP ratio was manipulated in three ways: with succinate and different concentrations of malonate and/or hexokinase; with 2-oxoglutarate (plus oligomycin) and different concentrations of hexokinase; and with added ATP in uncoupled mitochondria (oligomycin present). 2. Under all conditions used, citrulline synthesis was strictly correlated with the bulk intramitochondrial ATP/ADP ratio. 3. The curve relating citrulline synthesis and intramitochondrial ATP/ADP was shifted towards lower ATP/ADP ratios when the activity of carbamoyl-phosphate synthetase was enhanced by increasing the mitochondrial content of N-acetylglutamate. 4. It is concluded that under the experimental conditions used the intramitochondrial adenine nucleotides behave as a homogeneous pool.
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PMID:Relationship between the rate of citrulline synthesis and bulk changes in the intramitochondrial ATP/ADP ratio in rat-liver mitochondria. 720 12

The L-glutamine- and N-acetyl-L-glutamate-dependent carbamoyl phosphate synthetase III present in liver of spiny dogfish (Squalus acanthias) has been purified to a high state of purity. The purified enzyme has a Mr congruent to 160,000 and is subject to self-association which is facilitated by the presence of MgATP, L-glutamine, and N-acetyl-L-glutamate. The enzyme exhibits hysteretic properties. The time course of the reaction is characterized by a lag or a burst in activity, depending upon preincubation conditions, which can last up to 30 min. The lag period can be eliminated by preincubating the enzyme at 26 degrees C (but not at 4 degrees C) in the presence of the above three ligands. Mg2+ in excess of that required to complex ATP as MgATP and N-acetyl-L-glutamate are both required for full activity. The requirement of K+ for activity can be replaced by NH4+, but not by Na+. Ammonia can act as a substrate in place of L-glutamine, but the maximal rate is much less than that which can be obtained with L-glutamine. The glutamine-dependent activity is inhibited by ammonia. Apparent Km values under optimal conditions for N-acetyl-L-glutamate, L-glutamine, MgATP, bicarbonate, and ammonia are 0.013 mM, 0.16 mM, 0.35 mM, 1.7 mM, and 2 mM, respectively. The apparent Km for N-acetyl-L-glutamate decreases when the concentration of L-glutamine increases, and vice versa. The apparent Km values for these two ligands are increased when urea is present at normal physiological concentrations (0.4 M), and the activity of the enzyme is significantly affected by changes in urea concentration. Compounds known to act as allosteric effectors on other glutamine-dependent carbamoyl phosphate synthetases had little or no effect on this enzyme. The properties of the enzyme are consistent with the view that the function of this carbamoyl phosphate synthetase III is related to the synthesis of urea which is retained in these species as a mechanism for osmoregulation.
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PMID:Purification and properties of the glutamine- and N-acetyl-L-glutamate-dependent carbamoyl phosphate synthetase from liver of Squalus acanthias. 729 55


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