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Chromophore-assisted laser inactivation (CALI) can help to unravel localized activities of target proteins at defined times and locations within living cells. Covalent SNAP-tag labeling of fusion proteins with fluorophores such as fluorescein is a fast and highly specific tool to attach the photosensitizer to its target protein in vivo for selective inactivation of the fusion protein. Here, we demonstrate the effectiveness and specificity of SNAP-tag-based CALI by acute inactivation of alpha-tubulin and gamma-tubulin SNAP-tag fusions during live imaging assays of cell division. Singlet oxygen is confirmed as the reactive oxygen species that leads to loss of fusion protein function. The major advantage of SNAP-tag CALI is the ease, reliability, and high flexibility in labeling: the genetically encoded protein tag can be covalently labeled with various dyes matching the experimental requirements. This makes SNAP-tag CALI a very useful tool for rapid inactivation of tagged proteins in living cells.
ACS Chem Biol 2009 Feb 20
PMID:Chromophore-assisted laser inactivation of alpha- and gamma-tubulin SNAP-tag fusion proteins inside living cells. 1919 88

Conventional lithographic methods (e.g., electron-beam lithography, photolithography) are capable of producing high-resolution structures over large areas but are generally limited to large (>1 cm(2)) planar substrates. Incorporation of these features on unconventional substrates (i.e., small (<1 mm(2)) and/or non-planar substrates) would open possibilities for many applications, including remote fiber-based sensing, nanoscale optical lithography, three-dimensional fabrication, and integration of compact optical elements on fiber and semiconductor lasers. Here we introduce a simple method in which a thin thiol-ene film strips arbitrary nanoscale metallic features from one substrate and is then transferred, along with the attached features, to a substrate that would be difficult or impossible to pattern with conventional lithographic techniques. An oxygen plasma removes the sacrificial film, leaving behind the metallic features. The transfer of dense and sparse patterns of isolated and connected gold features ranging from 30 nm to 1 mum, to both an optical fiber facet and a silica microsphere, demonstrates the versatility of the method. A distinguishing feature of this technique is the use of a thin, sacrificial film to strip and transfer metallic nanopatterns and its ability to directly transfer metallic structures produced by conventional lithography.
ACS Nano 2009 Jan 27
PMID:A technique to transfer metallic nanoscale patterns to small and non-planar surfaces. 1920 49

Density functional theory calculations were performed to obtain an atomistic understanding of facet formation on Ir(210). We determined geometries and energetics of clean and oxygen-covered surfaces of planar Ir(210) as well as Ir(311) and two types of Ir(110) surfaces, which are involved in faceting by forming three-sided nanopyramids. Using the energies together with the ab initio atomistic thermodynamics approach, we studied the stability of substrate and facets in the presence of an oxygen environment. Our results show that facets are stable over the entire temperature range at which oxygen is adsorbed on the surface at coverages >/=0.45 physical ML, supporting the picture of a thermodynamic driving force. We also investigated the dependence of the phase diagram on the choice of the exchange-correlation functional and obtained qualitatively the same behavior. Finally, this work helps to better understand reactivity and selectivity of O-covered planar and faceted Ir surfaces in catalysis.
ACS Nano 2008 Jun
PMID:First-principles studies on oxygen-induced faceting of Ir(210). 1920 46

SiO is the dominant silicon bearing molecule in the circumstellar medium; however, it agglomerates to form oxygen-rich silicates. Here we present a synergistic effort combining experiments in beams with theoretical investigations to examine mechanisms for this oxygen enrichment. The oxygen enrichment may proceed via two processes, namely, (1) chemically driven compositional separation in (SiO)(n) motifs resulting in oxygen-rich and silicon-rich or pure silicon regions, and (2) reaction between Si(n)O(m) clusters leading to oxygen richer and poorer fragments. While SiO(2) molecules are emitted in selected chemical reactions, they readily oxidize larger Si(n)O(n) clusters in exothermic reactions and are not likely to agglomerate into larger (SiO(2))(n) motifs. Theoretically calculated optical absorption and infrared spectra of Si(n)O(m) clusters exhibit features observed in the extended red emissions and blue luminescence from interstellar medium, indicating that the Si(n)O(m) fragments could be contributing to these spectra.
ACS Nano 2008 Aug
PMID:From SiO molecules to silicates in circumstellar space: atomic structures, growth patterns, and optical signatures of SinOm clusters. 1920 78

Ultrathin films are important nanoscale structures that are used extensively in a variety of technological contexts. However, it has traditionally been difficult and costly to fabricate detachable and purely inorganic high aspect ratio films with controlled thickness and good uniformity. Here we report a versatile method to make separable purely inorganic membranes of various metal oxides such as Nb(2)O(5), TiO(2), WO(3), and Ta(2)O(5) with thicknesses ranging from 30 to 150 nm. Fluoride ions are migrated through the oxide film and upon arrival at the oxide-metal interface form a sacrificial soluble oxyfluoride layer. Fluorine also plays a role in controlling the porosity of the films. The study exposes the mechanism behind the detachment process that is largely due to the fast migration of fluoride anions relative to oxygen anions. The resulting films have a wide range of potential applications as catalysts or catalyst supports, filtration membranes, sensors, and more.
ACS Nano 2008 Nov 25
PMID:Universal method for the fabrication of detachable ultrathin films of several transition metal oxides. 1920 4

Nanomaterials (NM) exhibit novel physicochemical properties that determine their interaction with biological substrates and processes. Three metal oxide nanoparticles that are currently being produced in high tonnage, TiO(2), ZnO, and CeO(2), were synthesized by flame spray pyrolysis process and compared in a mechanistic study to elucidate the physicochemical characteristics that determine cellular uptake, subcellular localization, and toxic effects based on a test paradigm that was originally developed for oxidative stress and cytotoxicity in RAW 264.7 and BEAS-2B cell lines. ZnO induced toxicity in both cells, leading to the generation of reactive oxygen species (ROS), oxidant injury, excitation of inflammation, and cell death. Using ICP-MS and fluorescent-labeled ZnO, it is found that ZnO dissolution could happen in culture medium and endosomes. Nondissolved ZnO nanoparticles enter caveolae in BEAS-2B but enter lysosomes in RAW 264.7 cells in which smaller particle remnants dissolve. In contrast, fluorescent-labeled CeO(2) nanoparticles were taken up intact into caveolin-1 and LAMP-1 positive endosomal compartments, respectively, in BEAS-2B and RAW 264.7 cells, without inflammation or cytotoxicity. Instead, CeO(2) suppressed ROS production and induced cellular resistance to an exogenous source of oxidative stress. Fluorescent-labeled TiO(2) was processed by the same uptake pathways as CeO(2) but did not elicit any adverse or protective effects. These results demonstrate that metal oxide nanoparticles induce a range of biological responses that vary from cytotoxic to cytoprotective and can only be properly understood by using a tiered test strategy such as we developed for oxidative stress and adapted to study other aspects of nanoparticle toxicity.
ACS Nano 2008 Oct 28
PMID:Comparison of the mechanism of toxicity of zinc oxide and cerium oxide nanoparticles based on dissolution and oxidative stress properties. 1920 59

The increasing use of micro- and nanostructured silicon-based devices for in vivo therapeutic or sensing applications highlights the importance of understanding the immunogenicity of these surfaces. Four silicon surfaces (nanoporous, microstructured, nanochanneled, and flat) were studied for their ability to provoke an immune response in human blood derived monocytes. The monocytes were incubated with the surfaces for 48 h and the immunogenicity was evaluated based on the viability, shape factors, and cytokine expression. Free radical oxygen formation was measured at 18 h to elicit a possible mechanism invoking immunogenicity. Although no cytokines were significantly different comparing the response of monocytes on the tissue culture polystyrene surfaces to those on the micropeaked surfaces, on average all cytokines were elevated on the micropeaked surface. The monocytes on the nanoporous surface also displayed an elevated cytokine response, overall, but not to the degree of those on the micropeaked surface. The nanochanneled surface response was similar to that of flat silicon. Overall, the immunogenicity and biocompatibility of flat, nanochanneled, and nanoporous silicon toward human monocytes are approximately equivalent to tissue culture polystyrene.
ACS Nano 2008 May
PMID:In vitro immunogenicity of silicon-based micro- and nanostructured surfaces. 1920 6

Arrays of multiwalled carbon nanotubes doped with phosphorus (P) and nitrogen (N) are synthesized using a solution of ferrocene, triphenyl-phosphine, and benzylamine in conjunction with spray pyrolysis. We demonstrate that iron phosphide (Fe(3)P) nanoparticles act as catalysts during nanotube growth, leading to the formation of novel PN-doped multiwalled carbon nanotubes. The samples were examined by high resolution electron microscopy and microanalysis techniques, and their chemical stability was explored by means of thermogravimetric analysis in the presence of oxygen. The PN-doped structures reveal important morphology and chemical changes when compared to N-doped nanotubes. These types of heterodoped nanotubes are predicted to offer many new opportunities in the fabrication of fast-response chemical sensors.
ACS Nano 2008 Mar
PMID:Heterodoped nanotubes: theory, synthesis, and characterization of phosphorus-nitrogen doped multiwalled carbon nanotubes. 1920 68

Significant enhancement in mechanical stiffness (10-200%) and fracture strength (approximately 50%) of graphene oxide paper, a novel paperlike material made from individual graphene oxide sheets, can be achieved upon modification with a small amount (less than 1 wt %) of Mg(2+) and Ca(2+). These results can be readily rationalized in terms of the chemical interactions between the functional groups of the graphene oxide sheets and the divalent metals ions. While oxygen functional groups on the basal planes of the sheets and the carboxylate groups on the edges can both bond to Mg(2+) and Ca(2+), the main contribution to mechanical enhancement of the paper comes from the latter.
ACS Nano 2008 Mar
PMID:Graphene oxide papers modified by divalent ions-enhancing mechanical properties via chemical cross-linking. 1920 84

ZnO nanowires (NWs) are grown on a bulk copper half-transmission electron microscopy grid by chemical vapor deposition in a high temperature tube furnace. Photoluminescence (PL) microscopy revealed band gap emission at 380 nm and a more intense visible emission around 520 nm due to defect states in these NWs. High-resolution transmission electron microscopy shows that the ZnO NWs are single crystalline with hexagonal structure. Auger electron spectroscopy (AES) and energy dispersive X-ray spectroscopy reveal that copper atoms are present along the length of the NW. AES also found that the surface of the NWs is oxygen rich. The surface concentration of zinc increases moving from the tip toward the base of the NW while the concentration of oxygen decreases. The copper in this system not only remains at the tip of the growing NW but also acts as a dopant along the length of the NW, leading to a decrease in the intensity of the band gap PL of these NWs.
ACS Nano 2008 Feb
PMID:Analysis of copper incorporation into zinc oxide nanowires. 1920 39


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