Gene/Protein Disease Symptom Drug Enzyme Compound
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Query: EC:3.6.3.1 (Mg2+-ATPase)
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Lipopolysaccharide (LPS) is one of the major components of the outer membrane of gram-negative bacteria. It is an amphipathic molecule compose of lipid A, a core oligosaccharide and an O-specific antigen. O-antigen, which is a repeat-unit polysaccharide, is a major contribution to the antigenic variability of the bacterial cell surface. The genes of O-antigen gene cluster are responsible for the synthesis of the O-antigen. The O-antigen gene cluster of E. coli O141 was sequenced and found to contain the genes rmlBDAC and manBC for the biosynthesis of nucleotide sugars dTDP-rhamnose and GDP-mannose, respectively, encoding genes for Ounit flippase (wzx), O-antigen polymerase (wzy) and potential transferase genes. The possible biosynthesis pathway for O-antigen of E. coli O141 was proposed. Two genes specific to E. coli O141 were identified. This work provides the basis for a sensitive test by PCR for the rapid detection of E. coli O141. Phylogenetic trees for the rmlB, rmlD, rmlA, and rmlC genes and manB, manC genes were generated and the comparisons were made among different strains. We find that these genes are typical E. coli genes and might have been involved in recombination events between O-antigen gene clusters.
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PMID:[Sequence of Escherichia coli O141 O-antigen gene cluster and analyses of its evolutionary history]. 1563 53

Escherichia coli O11 belongs to Shiga toxin-producing Escherichia coli (STEC), which can cause food-borne disease, hemorrhagic colitis, and hemolytic-uremic syndrome (HUS) in humans. Because of its character of specificity, the O-antigen gene cluster provides the best material for the selection of molecular markers which can be used for rapid genotyping of bacterial strain. In this study, the E.coli O11 O-antigen gene cluster was amplified by Long-range PCR and was sequenced using Shotgun-sequencing approach. Twelve open reading frames were assigned functions on the basis of homology in the E. coli O11 O-antigen gene cluster, including UDP-N-acetyl glucosamine-4-epimerase gene (gne), genes responsible for the biosynthesis of GDP-L-fucose (gmd, fcl, gmm, manC, manB), glycosyl transferase genes, O-unit flippase gene (wzx) and O-antigen polymerase gene (wzy). By polymerase chain reaction against representative stains for all the 166 E. coli and 43 Shigella O serotypes, two genes and four pairs of primers were identified to be specific to E. coli O11. Further PCR was done to detect E. coli O11 from the environmental specimens, and the sensitivities for detecting E.coli O11 from the pork and dejecta specimens were 0.25 cfu/g and 2.5 x 10(3) cfu/g, respectively. Moreover, eight probes were designed and proved to be unique to E. coli O11, which provides the basis for a sensitive test of the rapid detection of E. coli O11 by DNA microarray method.
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PMID:[Sequence of Escherichia coli O11 O-antigen gene cluster and identification of molecular markers specific to O11]. 1693 98