Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound   Target Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound

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Query: EC:3.6.1.3 (ATPase)
65,361 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

This paper presents some evidence that the osmotic shock-sensitive, energy-dependent transfer of vitamin B12 from outer membrane receptor sites into the interior of cells of Escherichia coli requires an energized inner membrane, without obligatory intermediation of adenosine 5'-triphosphate (ATP). The experiments measured the effects of glucose, D-lactate, anaerobiosis, arsenate, cyanide, and 2,4-dinitrophenol upon the rates of B12 transport by starved cells of E. coli KBT001, which possesses a functional Ca2+, Mg2+-stimulated adenosine triphosphatase (Ca,MgATPase), and of E. coli AN120, which lacks this enzyme. Both strains were able to utilize glucose and D-lactate aerobically to potentiate B12 transport, indicating that the Ca,MgATPase was not essential for this process. When respiratory electron transport was blocked, either by cyanide or by anaerobic conditions, and the primary source of energy for the cells was presumably ATP from glucose fermentation, the rate of B12 transport was much reduced in E. coli AN120 but not in E.coli KBT001. These results support the view that the CaMgATPase can play a role in B12 transport but only when the energy for this process must be derived from ATP. The results of experiments with arsenate also supported the conclusion that the generation of phosphate bond energy was not absolutely required for B12 transport.
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PMID:Transport of vitamin B12 in Escherichia coli: energy dependence. 13 57

The human p68 protein, an SV40 large T related antigen, is an RNA dependent ATPase and RNA helicase. It belongs to a new large and highly conserved gene family, the DEAD box proteins, whose members are involved in a variety of processes requiring manipulation of RNA secondary structure such as translation and splicing. Multiple DEAD box genes are present in S.cerevisiae, but only one has previously been described in E.coli. Low stringency screening of an E.coli genomic library with a p68 cDNA probe led to the identification of dbpA, a new E.coli DEAD box gene located at 29.6 minutes on the W3110 chromosome. We report here the nucleotide and deduced amino acid sequences of the gene. We have overexpressed dbpA from its own promoter on a high copy number plasmid and identified the gene product as a approximately 50 kD protein by immunoblotting with an anti-DEAD antibody.
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PMID:Identification of a putative RNA helicase in E.coli. 221 14

The author has investigated the ultrastructural alterations of renal cortex in the shock state which was induced by E.coli endotoxin. The cytochemical study using horseradish peroxidase as a tracer and Na+-K+ ATPase has been performed in an attempt of correlation between morphological changes and functional impairment. In the initial stage after endotoxin administration, vascular changes which might be justified as morphological evidences for microcirculatory derangement were observed. In four hours after administration, aggregates of platelets and fibrin in the glomerular-loop were noted. The proximal tubuli were also involved in various extent of pathological changes compared with the distal tubuli. The increased vascular permeability was substantiated by the peroxidase labeling-method, however, the decreased glomerular permeability was confirmed which may represent the decreased glomerular filtration capacity. The reabsorption of the tracer in the proximal tubuli was initially increased, however, in later, the reabsorption was marked decreased, and similar alteration of membrane-linked Na+-K+ ATPase was also existed in the distal tubuli. In these observations, the tubular reabsorption mechanism was temporarily increased as the rebound reaction to maintain the biological equilibrium, however, on account for persisting microcirculatory derangement, sever functional impairment may occur which eventually leads to irreversible dysfunction of the kidney.
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PMID:[An ultrastructural and cytochemical study of the rat kidney in experimentally induced endotoxin shock]. 609 91

Complete nucleotide sequence of the genes for subunits of the H+ ATPase of E.coli has been determined and several hybrid plasmids carrying various portions of these genes have been constructed. Genetic complementation and recombination tests of about forty mutants of E.coli defective in the ATPase were performed using these plasmids for identifying the locations of the mutations. Two mutants defective in the delta subunit and a novel type of mutant defective in the b subunit of F0 were identified. The delta subunit mutants showed no proton conduction, suggesting that this subunit has an important role for the proton conduction. The ATPase of the b subunit mutant has a normal activity of proton channel portion, which phenotype is clearly different from that of mutants of the b subunit reported previously.
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PMID:Mutants of Escherichia coli H+-ATPase defective in the delta subunit of F1 and the b subunit of F0. 621 70

The heat-shock 70 protein (Hsp70) chaperone family is very conserved and its prokaryotic homologue, the DnaK protein, is assumed to form one of the cellular systems for the prevention and restoration of heat-induced protein denaturation. By using anti-DnaK antibodies we purified the DnaK homologue heat-shock cognate protein (Hsc70) from calf thymus to apparent homogeneity. This protein was classified as an eukaryotic Hsc70, since (i) monoclonal antibodies against eukaryotic Hsc70 recognized it, (ii) its amino-terminal sequence showed strong homology to Hsp70s from eukaryotes and, (iii) it had an intrinsic weak ATPase activity that was stimulated by various peptide substrates. We show that this calf thymus Hsc70 protein protected calf thymus DNA polymerases alpha and epsilon as well as Escherichia coli DNA polymerase III and RNA polymerase from heat inactivation and could reactivate these heat-inactivated enzymes in an ATP-hydrolysis dependent manner, likely leading to the dissociation of aggregates formed during heat inactivation. In contrast to this, DnaK protein was exclusively able to protect and to reactivate the enzymes from E.coli but not from eukaryotic cells. Finally, the addition of calf thymus DnaJ co-chaperone homologue reduced the amount of Hsc70 required for reactivation at least 10-fold.
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PMID:Calf thymus Hsc70 protein protects and reactivates prokaryotic and eukaryotic enzymes. 779 40

The maltose transport system of Escherichia coli is a well-characterized member of the ATP binding cassette transporter superfamily. Members of this family share sequence similarity surrounding two short sequences (the Walker A and B sequences) which constitute a nucleotide binding pocket. It is likely that the energy from binding and hydrolysis of ATP is used to accomplish the translocation of substrate from one location to another. Periplasmic binding protein-dependent transport systems, like the maltose transport system of E.coli, possess a water-soluble ligand binding protein that is essential for transport activity. In addition to delivering ligand to the membrane-bound components of the system on the external face of the membrane, the interaction of the binding protein with the membrane complex initiates a signal that is transmitted to the ATP binding subunit on the cytosolic side and stimulates its hydrolytic activity. Mutations that alter the membrane complex so that it transports independently of the periplasmic binding protein also result in constitutive activation of the ATPase. Genetic analysis indicates that, in general, two mutations are required for binding protein-independent transport and constitutive ATPase. The mutations alter residues that cluster to specific regions within the membrane spanning segments of the integral membrane components MalF and MalG. Individually, the mutations perturb the ability of MBP to interact productively with the membrane complex. Genetic alteration of this signalling pathway suggests that other agents might have similar effects. These could be potentially useful for modulating the activities of ABC transporters such as P-glycoprotein or CFTR, that are implicated in disease.
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PMID:Mutations that alter the transmembrane signalling pathway in an ATP binding cassette (ABC) transporter. 815 12

With succinate as free-energy source, Escherichia coli generating virtually all ATP by oxidative phosphorylation might be expected heavily to tax its ATP generating capacity. To examine this the H(+)-ATPase (ATP synthase) was modulated over a 30-fold range. Decreasing the amount of H(+)-ATPase reduced the growth rate much less than proportionally; the H(+)-ATPase controlled growth rate by < 10%. This lack of control reflected excess capacity: the rate of ATP synthesis per H(+)-ATPase (the turnover number) increased by 60% when the number of enzymes was decreased by 40%. At 15% H(+)-ATPase, the enzyme became limiting and its turnover was increased even further, due to an increased driving force caused by a reduction in the total flux through the enzymes. At smaller reductions of [H(+)-ATPase] the total flux was not reduced, revealing a second cause for increased turnover number through increased membrane potential: respiration was increased, showing that in E.coli, respiration and ATP synthesis are, in part, inversely coupled. Indeed, growth yield per O2 decreased, suggesting significant leakage or slip at the high respiration rates and membrane potential found at low H(+)-ATPase concentrations, and explaining that growth yield may be increased by activating the H(+)-ATPase.
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PMID:Excess capacity of H(+)-ATPase and inverse respiratory control in Escherichia coli. 846 88

The mutS gene, implicated in DNA mismatch repair, was cloned from an extremely thermophilic bacterium, Thermus thermophilus HB8. Its nucleotide sequence encoded a 819-amino acid protein with a molecular mass of 91.4 kDa. Its predicted amino acid sequence showed 56 and 39% homology with Escherichia coli MutS and human hMsh2 proteins, respectively. The T.thermophilus mutS gene complemented the hypermutability of the E.coli mutS mutant, suggesting that T.thermophilus MutS protein was active in E.coli and could interact with E.coli MutL and/or MutH proteins. The T.thermophilus mutS gene product was overproduced in E.coli and then purified to homogeneity. Its molecular mass was estimated to be 91 kDa by SDS-PAGE but approx. 330 kDa by size-exclusion chromatography, suggesting that T.thermophilus MutS protein was a tetramer in its native state. Circular dichroic measurements indicated that this protein had an alpha-helical content of approx. 50%, and that it was stable between pH 1.5 and 12 at 25 degree C and was stable up to 80 degree C at neutral pH. Thermus thermophilus MutS protein hydrolyzed ATP to ADP and Pi, and its activity was maximal at 80 degrees C. The kinetic parameters of the ATPase activity at 65 degrees C were Km = 130 microM and Kcat = 0.11 s(-1). Thermus thermophilus MutS protein bound specifically with G-T mismatched DNA even at 60 degrees C.
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PMID:Mismatch DNA recognition protein from an extremely thermophilic bacterium, Thermus thermophilus HB8. 860 4

It is shown that -2H+/K(+)-exchange through the H(+)-K(+)-pump, formed by the F0F1-ATPase and the Trk H system, H(+)-K(+)-exchange via H(+)-K(+)-antiporter, formed by the F0 and the Trk G (core) system [1-2], and production of H2 in anaerobically grown E.coli are changed in the mutants with defects in components of formate hydrogen lyase complex, oxidizing formate to CO2 and H2. 2H+/K(+)-exchange and H2 production are destroyed, but H(+)-K(+)-exchange with a variable stoichiometry for N,N'-dicyclohexyl-carbodiimide-sensitive ion fluxes is displayed in the fdhF mutant E.coli FM911, where formate dehydrogenase(H) is absent. 2H+/K(+)-exchange does not occur, but H(+)-K(+)-exchange with variable stoichiometry for N,N'-dicyclohexylcarbodiimide-sensitive ion fluxes and H2 production are observed in the uncD mutant E.coli AN817 with defect in beta subunit of the F1. Deletion of the hyc-operon in mutant E.coli HD700, led to absence of hydrogenase 3, destroys H(+)-K(+)-exchange and H2 production. H2 evaluation is shown in the E.coli K12(lambda) protoplasts, treated with toluene, by adding of NADH into the medium, containing ATP and K+. It is inhibited by N,N'-dicyclohexylcarbodiimide. H2 production is increased by adding of dithiothreitol, when NADH is changed by formate. It is lost in the mutants with defects in the F0 (E.coli AN936) or in the Trk A protein (E.coli TK2242). Dehydrogenase(H) and hydrogenase 3 are assumed to link mutually with a H(+)-K(+)-pump operation, reducing equivalents, necessary for a dithiol-disulfide interconversion within a mechanism of pump, are transferred from formate by means of dehydrogenase(H) to hydrogenase 3 through the F0F1 and the Trk H system to produce H2. It is assumed that hydrogenase 3 can interact with a mechanism of H(+)-K(+)-antiporter, NADH could serve as a donor of reducing equivalents. A role of thiol-groups and dithiol-disulfide interconversion in a functions of both mechanism for H(+)-K(+)-exchange is confirmed.
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PMID:[Role of components of formate-hydrogen-lyase in forming molecular hydrogen and their connection with proton-potassium exchange in anaerobically grown Escherichia coli]. 872 54

The character of H(+)-K(+)-exchange in E.coli, grown in anaerobic conditions in the presence of sodium nitrate and performed a nitrate respiration, has been studied. The K+ uptake has been shown to occur by one step, to be not inhibited by N,N'-dicyclohexylcarbodiimide, but to be stopped by arsenate and protonophore. It has K(m) of 4.5 mM, K+ accumulation in cell is more than 200 mM and K+ distribution between the cytoplasm and the medium is more than 10(3) (K+ equilibrium potential is achieved 190 mV). To switch on a mechanism of K+ uptake is depended on osmotic shock and carried out upon positive as well as negative shocks in spheroplasts. A H+ efflux occurs with constant rate while glucose is in the medium and a stoichiometry for the initial H+ to K+ fluxes is variable upon a different experimental conditions. In spite of H(+)-K(+)-exchange in anaerobically grown E.coli, a production of H2 in bacteria is not observed, an ATPase activity of isolated membranes sensitive, to N,N'-dicyclohexylcarbodiimide is not stimulated by K+ and lost in E.coli mutant with an unc-deletion. It is concluded that H+ and K+ transfer through the membranes in E.coli performed a nitrate respiration, occur through different systems-a respiration chain and the TrkA system of K+ uptake. The latest operates itself, has no ATPase activity and interacts with membrane proton pumps indirectly using transmembrane proton gradient (delta mu H+) as a driving force as well as ATP as a regulator of activity. A sensitivity of this system to osmotic shock is lost under destruction of periplasmic space.
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PMID:[Character of K+ absorption and its interaction with membrane protein pumps in Escherichia coli, grown under anaerobic conditions in the presence of nitrate]. 872 55


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