Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound   Target Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound

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Query: EC:3.5.1.4 (deaminase)
5,113 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

alpha-Bromoisovalerylurea (BIU) is used as model substrate for studies on the pharmacokinetics of glutathione conjugation in vivo. Its metabolism in isolated rat hepatocytes is presently studied. A major part of the substrate was conjugated with glutathione, but also amidase-catalyzed hydrolysis occurred, resulting in the products urea and alpha-bromoisovaleric acid (BI). The amidase activity was located in the microsomal fraction of the rat liver. The product of hydrolysis, BI, also was conjugated efficiently with glutathione. In glutathione-depleted hepatocytes, no glutathione conjugates but only urea and BI were formed. A pronounced stereoselectivity in the metabolism of the BIU enantiomers was observed: (R)-BIU was conjugated with glutathione much faster than (S)-BIU. (S)-BIU was hydrolyzed substantially in the cells and the glutathione conjugate of the hydrolytic product, (S)-BI, could be detected. At high BIU concentrations (500 microM of the racemate) intracellular glutathione was seriously depleted; then, the cosubstrate availability most likely was the rate-limiting factor in the conjugation of BIU with glutathione. More urea was formed from (racemic) BIU in isolated rat hepatocytes in the present study than in the perfused liver and the intact rat in previous studies. This in vivo-in vitro difference is tentatively assigned to differences in glutathione availability in these systems. The results suggest that BI may also be a useful model substrate to study the kinetics of glutathione conjugation in vivo and in vitro.
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PMID:Stereoselective glutathione conjugation and amidase-catalyzed hydrolysis of alpha-bromoisovalerylurea enantiomers in isolated rat hepatocytes. 366 62

Rats given a lethal dose (LD(99.9)) of ammonium acetate (10.8 mmol/kg of body weight) were protected to the extent of 85 and 76% when previously injected with N-carbamoyl glutamate or L-arginine, respectively, at a level of 4 mmol/kg of body weight. At a dose of 1 mmol/kg of body weight, L-arginine protected 24%, while N-carbamoyl-L-glutamate protected 61% of the animals. When a combination of N-carbamoyl-L-glutamate plus L-arginine (1 mmol each per kg of body weight) was injected, 100% of the rats were protected. The efficacy of N-carbamoyl-L-glutamate is related to its role as an activator of mitochondrial carbamoyl phosphate synthetase (EC 2.7.2.5) and its resistance to hydrolysis by tissue acylaminoacid acylase. N-Acetyl-L-glutamate, the naturally occurring and most effective activator of mitochondrial carbamoyl phosphate synthetase, was relatively ineffective in protection against lethal dose of ammonium acetate, because of its ready hydrolysis by acylaminoacid acylase. The findings reported provide a rational basis for the use of N-carbamoyl-L-glutamate plus L-arginine in the prevention and treatment of hyperammonemia in clinical conditions of liver disease and parental infusion of amino acids, and in feeding of urea supplements to ruminants.
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PMID:Ammonia intoxication in rats: protection by N-carbamoyl-L-glutamate plus L-arginine. 450 11

From Bacillus sphaericus ATCC 12123 an aryl acylamidase (EC 3.5.1.13) was purified to homogeneity by ion exchange chromatography, gel filtration, and polyacrylamide gel electrophoresis. The enzyme is inducible by various phenylamides of the acylanilide, phenylcarbamate, and methoxysubstituted phenylurea type. It has a molecular weight of 75,000. Enzyme activity was inhibited by sulfhydryl reagents, several metal ions, and 3,4-dichloroaniline (a product of linuron degradation). A requirement for divalent metal ions in enzyme activity could not be demonstrated. In the presence of 6 M urea an irreversible inactivation of the enzyme occurred. The hydrolysis of L-alanine-4-nitroanilide was competitively inhibited by puromycin.
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PMID:Purification and properties of an aryl acylamidase of Bacillus sphaericus, catalyzing the hydrolysis of various phenylamide herbicides and fungicides. 476 92

Treatment of normal human brain mitochondria with a mixture containing Triton X-100 and urea resulted in solubilization of monoamine oxidase (MAO) exhibiting tyramine-, serotonine-, phenylethylamine- and dopamine deaminase activities at ratios similar to those characteristic for the initial mitochondria. A purified preparation of the enzyme was obtained after AH-Sepharose chromatography; it was shown that in the brain there were present four isoenzymes of MAO possessing different substrate specificity. Investigation of some properties of MAO (activity, solubilization and isozyme composition) from brain regions showed absence of asymmetry and higher enzymatic activity in the subcortical brain region as compared with right and left brain cortex.
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PMID:[Multiple forms of human brain monoamine oxidase]. 728 68

We analysed the hydrolysis of 23 amides by 500 yeast and yeast-like strains isolated from clinical specimens, identified to species level by conventional methods, in order to verify the validity of this method of species identification. The results show that 10 of these amides (acetamide, acrylamide, alaninamide, formamide, glycinamide, propionamide, urea, thioacetamide, thiourea and valeramide) are sufficient to differentiate seven genera and 19 species, with an occasional requirement for three additional tests: cycloheximide susceptibility, surface film formation on liquid medium and ascospore formation. The study of the amidase activity in yeasts and yeast-like fungi seems to be a promising method of identifying strains isolated from clinical samples.
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PMID:Identification of yeasts by hydrolysis of amides. 747 83

Allantoate amidohydrolase from Bacillus fastidiosus was purified 170-fold to homogeneity as judged by isoelectric focusing and nondenaturing and sodium dodecyl sulfate polyacrylamide gel electrophoresis. The molecular mass was estimated to be 128 kDa. The enzyme appeared to be a homodimer with a subunit molecular mass of 66 kDa. The enzyme has an isoelectric point of 5.6. Allantoate amidohydrolase is a Mn(2+)-dependent enzyme exhibiting a pH optimum around 8.8. Its Km value for allantoate was estimated to be 9 mM. Similar to other microbial allantoate amidohydrolases the enzyme can be reversibly activated and inactivated. No indication for the involvement of arginine, lysine, and cysteine residues in the catalytic action of the enzyme was obtained. Diethylpyrocarbonate strongly inhibited the enzyme activity, indicating the involvement of histidine or tyrosine residues in catalytic action. However, no recovery was obtained by treatment with hydroxylamine as would be expected if such residues were modified. The enzyme could be reversibly denatured by urea, guanidine, and sodium dodecyl sulfate.
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PMID:Purification and characterization of allantoate amidohydrolase from Bacillus fastidiosus. 750 67

Urea amidohydrolase (urease) was immobilized within poly[di(methoxyethoxyethoxy)phosphazene] (MEEP) hydrogels. This was accomplished by mixing an aqueous solution (pH 7) of the soluble polymer with the enzyme. Films of the conjugate were cast and the solvent removed to yield an MEEP/enzyme composite. The conjugate films were dried in a vacuum and were then cross-linked by exposure to 0.2 or 0.5 Mrad of 60Co gamma-radiation to give an MEEP network with the enzyme entrapped within its matrix. The cross-linked films were sectioned into strips and were washed with pH 7 buffer to remove enzyme adhering to the surface. The films were then allowed to swell to form a hydrogel in pH 7 buffer to which was added a 1.0 M aqueous urea solution. The increase in pH from the conversion of urea to ammonia was monitored over a 24 h period. The immobilized enzyme could be recycled at least five times without significant loss of activity. Several control experiments were also performed by monitoring the pH of buffer solutions that contained hydrogels devoid of entrapped urease, and by monitoring the pH of solutions of the free, non-irradiated and free, irradiated urease after the addition of the urea solution. The polymer-free, irradiated urease lost little to no activity compared with its non-irradiated counterpart. The MEEP gel-immobilized enzyme retained approximately 80% of the activity of the non-irradiated, polymer-free urease.
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PMID:Activity of urea amidohydrolase immobilized within poly[di(methoxyethoxyethoxy)phosphazene] hydrogels. 791 2

Urea is a time-dependent active-site-directed inhibitor of Pseudomonas aeruginosa amidase. We found that 20 mM hydroxylamine caused bound urea to be released from the inactive urea:amidase complex with the restoration of enzyme activity. Bound urea restricts the titrability of the enzyme's -SH groups to 6 per hexameric molecule and protects it against thermal denaturation suggesting that urea binding provokes a conformational change in the enzyme. Mutations in the P. aeruginosa amidase gene that reduce the binding affinity of the enzyme for both urea and the substrate acetamide have been identified by direct sequencing of PCR-amplified mutant genes and confirmed by sequencing cloned PCR-amplified genes. The mutations were in two regions of the enzyme substituting either Arg-188 (or Gln-190, in one case) or Trp-144; one amidase that bound neither urea nor acetamide was doubly mutant with an amino-acid change at both sites.
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PMID:Arg-188 and Trp-144 are implicated in the binding of urea and acetamide to the active site of the amidase from Pseudomonas aeruginosa. 814 78

Major histocompatibility (MHC) class II antigens are heterodimeric cell surface glycoproteins consisting of an alpha and a beta chain. Although one-dimensional SDS-polyacrylamide gel electrophoresis analysis of purified MHC class II antigens shows a single diffuse band for each chain, multiple spots of identical molecular size were observed for each chain when analyzed by two-dimensional electrophoresis. The basis of this heterogeneity has not been clearly defined and has been predicted partially to be due to glycosylation and/or phosphorylation of the mature protein. To investigate the role of the three N-linked oligosaccharides of the alpha and beta chains in determining the isoelectric point of each chain, affinity-purified MHC class II antigens from human and rat sources were deglycosylated using asparagine amidase. The complete enzymatic removal of all three N-linked oligosaccharides was confirmed by SDS-polyacrylamide gel electrophoresis as well as by four different lectin-linked Western blot analyses. Two-dimensional gel analysis of the deglycosylated molecules shows no significant difference from the fully glycosylated chains. We have expressed truncated forms of the HLA DR2 chains which lack the transmembrane and cytoplasmically exposed regions in Escherichia coli. Two-dimensional electrophoresis of these single chains also reveal multiple banding patterns. The two-dimensional banding patterns described are unaffected by exposure to acidic or basic conditions, increased gel running time in the first dimension, treatment of the proteins with alkaline phosphatase to remove any potential phosphorylation, or preincubation in the presence of iodoacetamide. Multiple forms of recombinant alpha and beta chains were also observed in Tris-glycine-urea gels which merged into a single band in the presence of SDS. In addition, partially fractionated bands from preparative isoelectric focusing gels, when refocused, showed an identical number of multiple spots spanning the same range of isoelectric points. These results together suggest that each polypeptide chain of MHC class II antigens may exist in multiconformational forms, and the observed charge heterogeneity is independent of glycosylation and phosphorylation of the proteins.
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PMID:Intramolecular charge heterogeneity in purified major histocompatibility class II alpha and beta polypeptide chains. 814 5

The electron paramagnetic resonance (EPR) spin labeling technique has been employed to study the properties and conformation of the thiol protease papain in solution, using (1-oxyl-2,2,5,5-tetramethyl-delta 3-pyrroline-3-methyl) methanethiosulfonate (MTS) as the spin label. The measurements of papain's amidase activity corroborate the EPR results. The major findings are: (i) the motion of the MTS spin label is very sensitive to the active site conformation of papain, which may reflect the location of the pyrroline ring of the spin label near the narrow portion of the active site cleft of papain, and thus there may be intimate interactions between the spin label and its environment; (ii) the active site cleft of papain may have a more open structure at intermediate pH (pH 4.2 to 8.0) than at higher (pH > 8.0) or lower (pH < 4.2) pH, which is consistent with the bell-shape pH curve of the enzyme's amidase activity with the optimum pH at pH 7.00; and (iii) the motion of spin label at the active site of free papain in solution becomes slower upon addition of a denaturant (urea or guanidine hydrochloride), suggesting that the denatured enzyme may have a more closed active site cleft. Urea is more effective than guanidine hydrochloride in denaturing papain at low concentration. However, both urea and guanidine hydrochloride can completely inactivate papain at high concentrations. When an appropriate spin label is selected to label the active site of papain (such as MTS spin label), the EPR spin labeling technique may offer additional insight into the conformation of papain over that obtained by optical methods. These results are discussed in terms of possible studies of biofunctional membranes, opaque assemblies in which a biological molecule is attached to a polymeric membrane.
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PMID:Active site structure and stability of the thiol protease papain studied by electron paramagnetic resonance employing a methanethiosulfonate spin label. 816 Dec 1


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