Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound   Target Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound

---

Query: EC:3.1.30.2 (endonuclease)
18,621 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

An intron-containing tobacco tRNA(Tyr) precursor synthesized in a HeLa cell nuclear extract has been used to develop a cell-free processing and splicing system from wheat germ. Removal of 5' and 3' flanking sequences, accurate excision of the intervening sequence, ligation of the resulting tRNA halves, addition of the 3'-terminal CCA sequence and modification of seven nucleosides were achieved in appropriate wheat germ S23 and S100 extracts. The maturation of pre-tRNA(Tyr) in these extracts resembles the pathway observed in vivo for tRNA biosynthesis in Xenopus oocytes and yeast in that processing of the flanks precedes intron excision. Most of the modified nucleosides (m2(2) G, psi 35, psi 55, m7G and m1A) are introduced into the intron-containing pre-tRNA with mature ends, whereas two others (m1G and psi 39) are only found in the mature tRNA(Tyr). Processing and splicing proceed very efficiently in the wheat germ extracts, leading to complete maturation of 5' and 3' ends followed by about 65% conversion to mature tRNA(Tyr) under our standard conditions. The activity of the wheat germ endonuclease is stimulated 3-fold by the non-ionic detergent Triton X-100. All previous attempts to demonstrate the presence of a splicing endonuclease in wheat germ had failed (Gegenheimer et al., 1983). Hence, this is the first cell-free plant extract which supports pre-tRNA processing and splicing in vitro.
...
PMID:A cell-free plant extract for accurate pre-tRNA processing, splicing and modification. 367 5

Mature Simian virus 40 (SV40) chromosomes were isolated from infected CV-1 monkey cells by a hypotonic extraction method that not only allowed replicating viral chromosomes to faithfully continue DNA replication in vitro, but also was found to assemble nascent DNA into nucleosomes with a structure and arrangement typical of native viral chromosomes. Detailed analysis of the DNA and nucleoprotein products from micrococcal nuclease and DNase I digestion of mature viral chromosomes assembled in intact cells showed that the structure of SV40 and CV-1 cellular nucleosomes was the same. Furthermore, the histone composition of viral chromosome was indistinguishable from that of its host. In contrast to the identity in nucleosome structure, nucleosome spacing on isolated SV40 chromosomes was not as regular as on cellular chromatin. When 1% of the DNA was solubilized by micrococcal nuclease, as many as 20 cellular DNA bands were clearly resolved by gel electrophoresis, but only 6 to 7 viral DNA bands were observed and they were broader and less well resolved. In addition, micrococcal nuclease digested SV40 chromosomes at a faster initial rate and to a greater extent than CV-1 chromatin present in the same tube. Either BglI or EcoRI restriction endonuclease cut a single site in 30% of the SV40 chromosomes which suggested that viral nucleosomes were not located in a unique phase with respect to DNA sequence, but appeared to be randomly spaced around the genome. Viral chromosome structure was basically unaltered in hypotonically extracted chromosomes exposed to 200 or 600 mM NaCl and in isotonically extracted chromosomes prepared in the presence of Triton X-100 and EDTA. These results confirm and extend our previous data on the arrangement of SV40 nucleosomes inside isolated nuclei and demonstrate that the structure of viral chromosomes was not altered by the isolation procedures employed. The data are consistent with a model in which an average of 22 nucleosomes, randomly distributed around the SV40 genome, are separated by non-nucleosomal spacer regions which account for about 20% of the total DNA.
...
PMID:Structure, spacing, and phasing of nucleosomes on isolated forms of mature simian virus 40 chromosomes. 624 87

An endodeoxyribonuclease from HeLa cells acting on apurinic/apyrimidinic (AP) sites has been purified to apparent homogeneity as judged by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis. The presence of Triton X-100 was necessary throughout the purification for stabilization and stimulation of activity. The endonuclease has an apparent native molecular weight of 32,000 determined by molecular sieving and an apparent subunit molecular weight of 41,000 as judged by its electrophoretic mobility in SDS-polyacrylamide gels. The activity has an absolute requirement for Mg2+ or Mn2+ and a broad pH optimum between 6.7 and 9.0 with maximal activity near pH 7.5. The enzyme has no detectable exonuclease activity, nor any endonuclease activity on untreated duplex or single-stranded DNA. It is inhibited by adenine, hypoxanthine, adenosine, AMP, ADP-ribose, and NAD+, but it is unaffected by caffeine, the pyrimidine bases, ADP, ATP, or NADH. The use of a variety of damaged DNA substrates provided no indication that the enzyme acts on other than AP sites. The enzyme appears to cleave AP DNA so as to leave deoxyribose-5-phosphate at the 5' terminus and a 3'-OH at the 3' terminus; it also removes deoxyribose-5-phosphate from AP DNA which has deoxyribose at the 3' terminus. Specific antibody has been produced in rabbits which interacts only with a 41,000-dalton protein present in the purified enzyme (presumably the enzyme itself), as well as with partially purified AP endonuclease fractions from human placenta and fibroblasts.
...
PMID:Purification and characterization of an apurinic/apyrimidinic endonuclease from HeLa cells. 625 65

An apurinic endonuclease activity has been characterized in yeast mitochondrial. It is dependent on Mg2+, stimulated by about 50% in the presence of 50 mM NaCl and inhibited at higher NaCl concentrations. It is located in the inner mitochondrial membrane and requires high concentrations of detergent (1.5-3% Triton X-100) to be extracted. The same treatment extracts several other endonuclease activities: the two Mg2+-dependent endonuclease activities cleaving double-stranded DNA at pH 7.5 and 5.4 respectively, the ethidium-bromide-stimulated endonuclease activity, the endonuclease activity cleaving single-stranded DNA at pH 7.l5 [Jacquemin-Sablon et al. (1979) Biochemistry, 18, 119-127], and a manganese-stimulated deoxyribonuclease activity cleaving double-stranded DNA at pH 7.5 which has been discovered during the present work. Another endonuclease activity cleaving double-stranded DNA at pH 7.5 in the presence of Mg2+, slightly stimulated by low NaCl concentrations and inhibited by ethidium bromide is extracted from the membrane pellet remaining after the treatment with 1.5% Triton X-100 by a second treatment with 1.5% Triton X-100 plus 1 M KCl. The presence in the mitochondrial membrane of this apurinic endonuclease activity indicates that, like nuclear and prokaryotic DNA, yeast mitochondrial DNA is also subject to specialized repair systems.
...
PMID:Endonucleases in yeast mitochondria: apurinic and manganese-stimulated deoxyribonuclease activities in the inner mitochondrial membrane of Saccharomyces cerevisiae. 628 1

The major AP endonuclease from Chlamydomonas reinhardi has been partially purified and characterized. The enzyme has a molecular weight of about 38 000 as measured by molecular sieving. There is an absolute requirement for a divalent cation, with magnesium being better than manganese. The activity is stimulated by dithiothreitol and Triton X-100. The activity is sensitive to ionic strength, as 50 mM NaCl or KCl results in 70% inhibition. The enzyme is specific for apurinic and apyrimidinic (AP) sites and does not cleave DNA that has been damaged by ultraviolet light, methyl methanesulfonate, osmium tetroxide or sodium bisulfite. There is no deficiency in the AP endonuclease activity in extracts prepared from two mutants of Chlamydomonas that are sensitive to both ultraviolet light and methyl methanesulfonate. There was no evidence for induction of AP endonuclease after exposure of the cells to methyl methanesulfonate.
...
PMID:Partial purification and characterization of the major AP endonuclease from Chlamydomonas reinhardi. 672 64

DNase VIII is an exonuclease purified from human placenta trophoblast nuclei. The enzyme has a pH optimum of 9.5 and requires a divalent cation. It is inhibited by salt and stimulated by Triton X-100. Glycerol gradient analysis of the activity indicates a sedimentation coefficient of 2.8 S (31,000 daltons if globular). This enzyme initiates hydrolysis from 5'-phosphorylated termini of single-stranded DNA and acts at internal phosphodiester bonds liberating 5'-phosphorylated oligonucleotides. It degrades polynucleotides of repeating base sequence as well as single-stranded DNA, yielding oligonucleotides of even number, in which the main reaction products are dinucleotides. The activity on denatured DNA is not inhibited by the presence of ultraviolet-induced photoproducts. DNase VIII can also initiate hydrolysis at those distorted termini produced by the action of Micrococcus luteus dimer specific endonuclease on duplex DNA, which contains cyclobutane dimers.
...
PMID:Purification and characterization of DNase VIII. A 5'-3' directed exonuclease from human placental nuclei. 682 22

We have isolated the nuclear matrices from Pisum sativum cell nuclei using three methods: i. standard procedure involving extraction of cell nuclei with 2 M NaCl and 1% Triton X-100; ii. the same with pretreatment of cell nuclei with 0.5 mM CuSO4 (stabilisation step); and iii. method including lithium diiodosalicylate extraction. We compared the polypeptide pattern and residual DNA content of the nuclear matrices isolated. The nuclear matrices displayed a specific endonuclease activity which was due to the presence of a 32 kDa protein. The isolated nuclear matrices bound specifically the scaffold-attached (SAR) DNA derived from human beta interferon gene, in the exogenous SAR binding assay. Using the DNA-protein binding blot assay we demonstrated the presence of two nuclear matrix proteins of 66 kDa and 62 kDa which bound specifically SAR DNA.
...
PMID:Interaction of the Pisum sativum nuclear matrix proteins with SAR DNA. 765 65

DNA topoisomerase I isolated from the lower eukaryote Neurospora crassa mitochondria was characterized. Molar mass of the enzyme in the native state is 120 kDa and 60-65 kDa when denatured. The pH optimum of the enzyme is 7.8 and the KCl optimum concentration is 40 mmol/L. This topoisomerase is independent of ATP and Mg2+. N-Ethylmaleimide, 4-chloromercuribenzoate, SDS, guanidinium chloride, polyethylene glycol, heparin and ethidium bromide inhibit its activity, while novobiocin, nalidixic acid, Triton X-100 and chloroquine do not. Polyamines and histone H1 stimulate the topoisomerase activity. We classify this DNA topoisomerase as type I and eukaryotic. Conversion of the topoisomerase to a nonspecific endonuclease at increased temperature is proposed.
...
PMID:Characterization of mitochondrial DNA topoisomerase I from Neurospora crassa. 795 26

In the process of developing a gene transfer system for the marine, unicellular, nitrogen-fixing cyanobacterium Cyanothece sp. strain BH68K, two major restriction barriers have been identified. A cell wall-associated nuclease exhibited non-site-specific degradation of covalently closed circular and linear double-stranded DNA molecules, including Cyanothece sp. strain BH68K chromosomal DNA. The nuclease is easily released from intact cells by using water or buffer containing Triton X-100. Nuclease activity was undetectable in cell extracts prepared from water-washed cells. Comparison of the restriction endonuclease susceptibility of Cyanothece sp. strain BH68K DNA to that of Anabaena sp. strain PCC 7120 revealed that these organisms have a nearly identical pattern of restriction and therefore may contain similar systems for DNA methylation. Restriction by DpnI, MboI, and Sau3AI indicated the presence of adenine methylation. Cyanothece sp. strain BH68K cell extracts contain a type II restriction endonuclease, Csp68KI. The activity of Csp68KI was easily detected in cell extracts without extensive purification. Csp68KI is an isoschizomer of AvaII and recognizes the nucleotide sequence 5'-GG(A/T)CC-3'. Cleavage occurs between the guanosine nucleotides producing 3-bp 5' overhang ends.
...
PMID:Identification of a nuclease and host restriction-modification in the unicellular, aerobic nitrogen-fixing cyanobacterium Cyanothece sp. 807 Dec 41

The nuclear matrices from White bush (Cucurbita pepo var. patisonina) cell nuclei have been isolated using three methods: I, standard procedure involving extraction of cell nuclei with 2 M NaCl and 1% Triton X-100; II, the same with pre-treatment of cell nuclei with 0.5 mM CuSO4 (stabilisation step); and III, method with extraction by lithium diiodosalicylate (LIS), and compared the polypeptide pattern. The isolated matrices specifically bind SAR DNA derived from human beta-interferon gene in the exogenous SAR binding assay and in the gel mobility shift assay. Using IgG against the 32 kDa endonuclease we have found in the DNA-protein blot assay that this protein is one of the proteins binding SAR DNA. We have identified three proteins with molecular mass of 65 kDa, 60 kDa and 32 kDa which are responsible for SAR DNA binding in the gel mobility shift assay experiments.
...
PMID:Identification of the proteins responsible for SAR DNA binding in nuclear matrix of Cucurbita pepo. 858 59


<< Previous 1 2 3 Next >>

---