Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts:   Target Concepts:
Query: EC:3.1.30.1 (S1 nuclease)
 3,660 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

We have developed a novel plasmid isolation procedure and have adapted it for use on an automated nucleic acid extraction instrument. The protocol is based on the finding that phenol extraction of a 1 M guanidinium thiocyanate solution at pH 4.5 efficiently removes genomic DNA from the aqueous phase, while supercoiled plasmid DNA is retained in the aqueous phase. S1 nuclease digestion of the removed genomic DNA shows that it has been denatured, which presumably confers solubility in the organic phase. The complete automated protocol for plasmid isolation involves pretreatment of bacterial cells successively with lysozyme, RNase A, and proteinase K. Following these digestions, the solution is extracted twice with a phenol/chloroform/water mixture and once with chloroform. Purified plasmid is then collected by isopropanol precipitation. The purified plasmid is essentially free of genomic DNA, RNA, and protein and is a suitable substrate for DNA sequencing and other applications requiring highly pure supercoiled plasmid.
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PMID:Plasmid purification by phenol extraction from guanidinium thiocyanate solution: development of an automated protocol. 171 49

Native DNA molecules isolated either in the presence of 50 micrograms x ml(-1) of proteinase K (PK-DNA) or in the presence of 6 mg x ml(-1) autodigested pronase (PRO-DNA) are about equal in size. Since shear forces were avoided as far as possible during the isolation procedure, the largest molecules found were longer than 100 microns. The average length of the traced molecules was 34.2 microns for PK-DNA and 29.7 microns for PRO-DNA. In contrast to PK-DNA the length of PRO-DNA molecules undergoes a dramatic change during denaturation. The average contour length of a denatured PRO-DNA molecules is only 6.9 microns. This reduction in length cannot be explained by shrinkage due to changes in ionic strength, pH and the effect of denaturing agents. Moreover, PK-DNA identically denatured was not dramatically changed in size. From this it must be concluded that PRO-DNA contains more internal ends than PK-DNA. This conclusion is supported by the results indicating that PRO-DNA is much more sensitive to nuclease S1 than PK-DNA. The results are consistent with previously published biochemical data suggesting that chromosomal DNA is 'nicked' or 'gapped' in a protease-catalyzed reaction at distinct protease-sensitive sites.
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PMID:Size of native and denatured DNA of Ehrlich ascites tumour cells isolated in the presence of different protease concentrations. 701 43