Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts:   Target Concepts:
Query: EC:3.1.27.4 (ribonuclease)
 6,621 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

The early stages of thermal unfolding of the tertiary structure of yeast tRNAPhe have been followed, in the presence and absence of Mg2+, by measuring changes in the chemical accessibility of the bases uracil and guanine. The reagent used in these studies is 1-cyclohexyl 3-[2-morpholino(4)-ethyl]carbodiimide methotosylate. 32P-labelled tRNA was used so that the points of modification could be examined with ribonuclease digestion and established fingerprinting techniques. Two regions of protection of Mg2+ have been found. One is within the oligonucleotide U8-A-m2G10 and the other is in the vicinity of residue U-59. The tertiary interactions and the D stem are the most readily melted parts of the teritary structure. In the absence of Mg2+ the region of U-59 is the first part of the tertiary structure to become accessible to the reagent. This is closely followed by the opening up of the 'wobble' G-U base pair in the aminoacyl stem. Most of the triple interactions in the augmented D helix are also disrupted early in the melting. The region of intricate interactions between the invariant G-G part of the D loop and the T-psi-C-G loop contains the most stable set of tertitary structure interactions.
 ...
PMID:Initial stages of the thermal unfolding of yeast phenylalanine transfer RNA as studied by chemical modification: the effect of magnesium. 41 74

Studies using isogenic transductant strains mlpA+ and mlpA as well as reversion analysis suggested that the physiological consequences of a structural gene mutation in murein lipoprotein include (i) increased sensitivity toward chelating agents ethylenediaminetetraacetic acid and ethyleneglycol-bis (beta-aminoethyl ether)-N,N-tetraacetic acid, (ii) leakage of periplasmic enzyme ribonuclease, (iii) weakened association between the outer membrane and the rigid layer accentuated by Mg2+ starvation, resulting in the formation of outer membrane blebs, and (iv) decreased growth rate in media of low ionic strength or low osmolarity. It is suggested that the bound form of lipoprotein plays an important role in the maintenance of the structural integrity of the outer membrane of the Escherichia coli cell envelope. Other outer membrane components may also contribute to the anchorage of outer membrane to the rigid layer, probably through ionic interactions with divalent cations. Using the phenotype of ribonuclease leakage as an unselected marker in a three-factor cross with P1 transduction, we were able to establish the gene order of man mlpA aroD pps on the E. coli chromosome.
 ...
PMID:Physiological characterization of an Escherichia coli mutant altered in the structure of murein lipoprotein. 41 67

Though DNase does not contain any cysteine residues, incubation of the enzyme with 2-nitro-5-thiocyanobenzoic acid in the presence of Ca2+ at pH values above 7.5 results in an irreversible inactivation of the enzyme. The inactivation also occurs when Ca2+ is replaced by Mg2+, but not in their absence. Amino acid analyses after acid hydrolyses of the completely inactivated ant the native enzymes show no significant differences in composition, including tryptophan and half-cystine residues. However, sodium dodecyl sulfate gel electrophoresis indicates enzyme cleavage by the treatment with 2-nitro-5-thiocyanobenzoic acid. This reagent does not inactivate chymotrypsin and lysozyme, and under conditions where bovine DNase is inactivated, does not inactivate other nucleases such as ribonuclease, snake venom phosphodiesterase, and spleen acid DNase. However, it inactivates malt DNase and can, therefore, be considered a specific inhibitor of DNase I. The inactivation kinetics is pseudo-first order, resembling Michaelis-Menten, with an affinity constant of 16.7 mM. It is the cyano group, not the thionitrobenzoic acid of 2-nitro-5-thiocyanobenzoic acid that reacts to form cyano-DNase.
 ...
PMID:Inactivation of bovine pancreatic DNase by 2-nitro-5-thiocyanobenzoic acid. I. A novel inhibitor for DNase I. 48 54

Atypical eukaryotic RNA polymerase activity was demonstrated in nuclei of Crypthecodinium cohnii, a eukaryote devoid of histones. Nuclei were isolated from growing cultures of this dinoflagellate and assayed for endogenous RNA polymerase (EC 2.7.7.6) activity. There was a biphasic response to Mg2+ with optima at approximately 0.01 and 0.02 M MgCl2, but in contrast to other eukaryotic RNA polymerases, this enzyme activity was inhibited by low MnCl2 concentrations. In the presence of 0.01 M MgCL2 the optimum (NH4)2SO4 concentration was 0.025 M, a concentration at which the nuclei were lysed. Incorporation of [3H]UMP into RNA was inhibited by actinomycin D and dependent on the presence of undergraded DNA, and the reaction product was sensitive to ribonuclease and KOH digestion. Omission of one or more ribonucleoside triphosphates greatly reduced the incorporation. Only a slight enhancement of RNA polymerase activity resulted from the addition of various amounts of native and denatured calf thymus DNA. Spermine caused a marked inhibition while spermidine had little effect on RNA synthesis in the nuclei. Under the optimum conditions described in the present paper the nuclei incorporated approximately 3 pmoles of [3H]UMP/microgram DNA at 25 C for 15 min, and approximately 80% of this activity was inhibited by the eukaryotic RNA polymerase II inhibitor, alpha-amanitin (20 micrograms/ml). A unique situation therefore exists in C. cohnii nuclei, in which absence of histones (a prokaryotic trait) is combined with alpha-amanitin-sensitive RNA polymerase activity (a eukaryotic trait).
 ...
PMID:RNA synthesis in isolated nuclei of the dinoflagellate Crypthecodinium cohnii. 57 93

Dormant gastrulae and developing embryos of the brine shrimp Artemia salina contain very low levels of nuclease activity. During early larval development, there is an induction of ribonuclease which has been partially purified and characterized. The enzyme catalyzes an endonucleolytic cleavage of RNA and has no detectable activity on native or denatured DNA. Among a series of synthetic polynucleotides, poly(U) is hydrolyzed with the highest efficiency and poly(G) is not cleaved by the enzyme. The activity on poly(U) is 100 times higher than on RNA. The enzyme requires Mg2+ or Mn2+ and in inactivated by treatment with chelating agent. The inactive preparations can be reactivated by Ca2+ and Mn2+ but not by Mg2+. The ribonuclease is thermosensitive and has maximal activity at pH 7.5. These properties distinguish the Artemia salina ribonuclease from other eukaryotic ribonucleases already reported. The high activity and specificity of this ribonuclease on poly(U) may suggest a role for this enzyme in the processing of the messenger RNA.
 ...
PMID:Purification and properties of a ribonuclease induced during the early larval development of Artemia salina. 71 Apr 39

Treatment of Escherichia coli with the antimicrobial agent N-dodecyldiethanolamine results in damage to the cytoplasmic membrane and rapid release of components of the metabolic pool. A slower secondary release then takes place. The material in the secondary release contains mainly low molecular compounds, nucleotides and nucleosides derived from the breakdown of ribosomal RNA. Some transfer RNA is also released. Breakdown of RNA occurs as a result of activation of the 'latent' ribonuclease I. Breakdown is inhibited by the ribonuclease inhibitors Ca2+ and Mg2+ and does not occur in a ribonuclease I-deficient strain of E. coli.
 ...
PMID:Antimicrobial action of dodecyldiethanolamine: activation of ribonuclease I in Escherichia coli. 80 Oct 34

The dependence of activation of latent RNAse of RNP particles isolated from rat skeletal muscles, on the concentration of K+ and Mg2+ in the incubation medium and on temperature was studied. During a short-term exposure (20 min 18 degrees) of RNP particles in the buffers containing K+ at concentrations varying from 0.05 M to 0.25 M and Mg2+ at concentrations from 0.001 M to 0.01 M no effect of endogenous ribonuclease was observed. It was shown that a significant activation of latent RNAse occurs during the incubation at room temperature in 24 hours provided that the incubation medium contains Mg2+ at concentrations not higher that 0.004 M. In the presence of 0.004 M Mg2+ degradation of polysomal mRNA and partial degradation of 18 S--rRNA takes place. At Mg2+ concentration as low as 0.001 M not only mRNA but also both rRNAs are accessible to the action of activated ribonuclease. 20 min heating of RNP particles up to 55 degrees C causes insignificant degradation of the polysomes and 18 S--rRNA. The increase in temperature by 5 degrees c results in the activation of latent RNAse followed by an almost complete degradation of mRNA and rRNA. The relationship between the integrity of the ribosomal structure and activation of latent ribonuclease is discussed.
 ...
PMID:[Activation of latent RNAse activity of RNP particles from rat skeletal muscles]. 85 24

A procedure is described for the isolation of polyribosomes from crude tissue homogenates of germinated pea seeds using Mg2+ precipitation in the presence of the ribonuclease inhibitor heparin. Collection of the polyribosomal pellet does not require the use of an ultracentrifuge. The method has a potentially wide application for polyribosome and messenger ribonucleoprotein isolation and might also be useful where conventional techniques have failed.
 ...
PMID:The isolation of polyribosomes from plant material using magnesium precipitation in the presence of heparin. 89 May 82

Polycations, including ribonuclease A, ribonuclease S protein and peptide, spermine, spermidine, and polylysines, enhance unstimulated and stimulated adenylate cyclase activity of beef thyroid membranes at low concentrations and inhibit these activities at high concentrations. Peak polylysine stimulation occurs with degrees of polymerization of 6 to 14, and for large polymers a potency limit for this maximum is reached at 4 X 10(-5) M expressed as lysine residues. Both enhancement and inhibition appear to be due to charge-charge interactions and are abolished by KC1. Polyanions are inhibitory only. The biphasic effect of polycations is seen on basal cyclase activity, occurs with prostaglandin E1- and 5'-guanylyl-imidodiphosphate-stimulated cyclase, but is most striking with thyrotropin. There is little enhancement of F--activated cyclase. The enhancement is not sensitive to changes in pH, Mg2+, or regenerating system and does not correlate with the stability constants between polycations and ATP. We suggest that the polycation effect is a general, electrostatic effect on membrane conformation and is not restricted to a particular receptor domain.
 ...
PMID:Charge effects in the activation of adenylate cyclase. 115 87

Selective cleavage of phosphodiester bonds in RNA is important in the processing of large RNA molecules. This paper reports specific cleavage at UA sequences in single stranded oligoribonucleotides as short as hexamers. The hydrolysis between U and A leaves a 2',3'-cyclic phosphate on the 5'-side and a 5'-hydroxyl group on the 3' side of the cleavage. The hydrolysis is promoted by a wide range of cofactors, including polymeric organic compounds such as polyvinylpyrrolydone (PVP) and by proteins. A variety of experiments suggests the cleavage is not due to contamination by ribonuclease. The rate of cleavage is a function of oligoribonucleotide, PVP and spermidine concentrations. Mg2+ is not required. The phenomenon described here can potentially provide a relatively simple way of coding chemical stability into single stranded RNA based on its sequence and structure. This process seems to be similar to that involved in post-transcriptional degradation of mRNA.
 ...
PMID:Nonenzymatic hydrolysis of oligoribonucleotides. 140 24


<< Previous 1 2 3 4 5 6 7 8 9 Next >>