Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound   Target Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound

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Query: EC:3.1.27.4 (ribonuclease)
6,621 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

1. Alkaline ribonuclease (pH optimum 7.6) was isolated from rye (Secale cereale L) germ cytosol and partially purified; the preparation was devoid of other nucleolytic activities. 2. The enzyme is a typical endonuclease hydrolysing all phosphodiester bonds in RNA, yielding ultimately purine and pyrimidine nucleoside 2',3'-cyclic phosphates and the corresponding 3'-phosphates. Upon extensive digestion of synthetic polyribonucleotides, pyrimidine, but not purine, nucleoside 3'-phosphates are formed. The enzyme does not hydrolyse synthetic purine cyclic nucleotides. 3. The enzyme does not depolymerize double-stranded complexes of poly(A) and poly(U). 4. Susceptibility to photooxidation and inhibition by 2-hydroxy-5-nitrobenzyl bromide and N-bromosuccinimide implies the involvement of tryptophan residue in the active centre of the enzyme.
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PMID:Alkaline ribonuclease from rye germ cytosol. 0 57

In order to investigate the nature of amino acid residues involved in the active in the active site of a ribonuclease from Aspergillus saitoi, the pH dependence of the rates of inactivation of RNase Ms by photooxidation and modification with diethylpyrocarbonate were studied. (1) RNase Ms was inactivated by illumination in the presence of methylene blue at various pH's. The pH dependence of the rate of photooxidative inactivation of RNase Ms indicated that at least one functional group having pKa 7.2 was involved in the active site. (2) Amino acid analyses of photooxidized RNase Ms at various stages of photooxidative inactivation at pH's 4.0 and 6.0 indicated that one histidine residue was related to the activity of RNase Ms, but that no tryptophan residue was involved in the active site. (3) 2',(3')-AMP prevented the photooxidative inactivation of RNase Ms. The results also indicated the presence of a histidine residue in the active site. (4) Modification of RNase Ms with diethylpyrocarbonate was studied at various pH's. The results indicated that a functional group having pKa 7.1 was involved in the active site of RNase Ms.
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PMID:Photooxidation and carbethoxylation of a minor ribonuclease from Aspergillus saitoi. 2 78

Purified tRNATrp from bovine liver, accepting 1700 pmol tryptophan per A260nm unit, was completely digested with pancreatic ribonuclease and T1 ribonuclease. The sequences of the resulting oligonucleotides were determined and the primary structure of the tRNA was deduced. These analyses showed numerous incomplete post-transcriptional modifications, and several positions heterogenously occupied by two different nucleotides, which lead us to think that in bovine liver there exist a mixture of several tRNATrp.
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PMID:Primary structure of bovine liver tRNATrp. 10 55

This paper demonstrates the existence of regions in eight small globular proteins in which the side chains of sulfur-containing amino acids (cysteine and methionine) alternate in space with side chains of aromatic amino acids (histidine, phenylalanine, tryptophan and tyrosine). The proteins are: rubredoxin, high potential iron protein, cytochrome c, flavodoxin, deoxyhemoglobin, trypsin inhibitor, ribonuclease-S, and lysozyme. The sulfur-pi-bonded 'chains' involve a minimum of five and a maximum of 10 amino acids, and contain the most polarizable atoms within proteins. S-pi-chains give extra stability to the folding of proteins; they may also afford paths for the step-wise movement of electrons.
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PMID:Chains of alternating sulfur and pi-bonded atoms in eight small proteins. 20 19

From a strain of Escherichia coli with two copies of the tryptophan (trp) operon and one copy of the lactose (lac) operon, under control of one of the trp regulatory elements, we have isolated a mutant which does not grow in a medium containing 19 amino acids, unless tryptophan is added, and which cannot ferment lactose. The apparent pleiotropic nature of the mutation(s) is indicated by the very slow growth of mutant bacteria on minimal-medium agar supplemented with glucose and tryptophan. The amount of the trp enzymes (anthranilate synthetase and tryptophan synthetase) and trp messenger ribonucleic acid is reduced several-fold in the mutant compared to the isogenic wild-type strain, whereas the enzymes tryptophanyl-transfer ribonucleic acid synthetase and glucose 6-phosphate dehydrogenase remain the same. The incorporation of radioactive label into pulse-labeled but not into stable ribonucleic acid is significantly lower. Our results suggest that in the mutant organism the control of transcription of some operons, including the trp operon, is modified. An alternative explanation is that mutant bacteria contain a ribonuclease with increased activity for some messenger ribonucleic acid species.
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PMID:Escherichia coli mutant strain with altered expression of the tryptophan operon: isolation and preliminary characterization. 37 67

The second derivative absorption spectra of serum albumin, insulin, ribonuclease and lysozyme were measured under various conditions to determine the state and amount of their phenylalanine residues. The second derivative spectra of these proteins were very similar to that of phenylalanine in the region between 245 and 270 nm where tryptophan and tyrosine residues caused no appreciable interference. Denaturation of proteins with urea or guanidine hydrochloride caused decrease in the intensity of the second derivative spectra, but scarcely affected the positions of peaks and troughs. The amounts of phenylalanine residues in proteins calculated from a second derivative spectra of denatured proteins coincided well with those reported in the literature. The states of the phenylalanine residues in the proteins could be deduced from the change in optical intensity on denaturation.
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PMID:Estimation of state and amount of phenylalanine residues in proteins by second derivative spectrophotometry. 39 35

RNase U2 was purified and crystallized from the enriched culture medium (ammonium sulfate-urea-corn meal) of Ustilago sphaerogena and its characteristics were investigated. Chemical modification of RNase U2 was conducted with monoiodoacetic acid to carboxymethylate Glu-61 and with 2-methoxy-5-nitrotropone to nitrotroponylate the amino terminal residue. The amino terminal residue was modified reversibly by this reagent. Comparison of the 2'-AMP binding in the modified enzyme and the native one showed that Glu-61 is essential for the formation of the enzyme-substrate complex, while the amino terminal residue plays no important role in the enzymatic activity. The enzymatic activity and the structure of RNase U2 in aqueous organic solution were also investigated. The affinity of the enzyme for 2'-AMP, the inactivation by monoiodoacetic acid and the fluorescence intensity were examined. The profiles of the changes in the properties of the enzyme protein were consistent with those in the enzymatic activity. Fluorescence studies of the enzyme suggest that the tryptophan residue is closely related to the activity.
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PMID:Characterization of Ustilago Ribonuclease U2. Effects of chemical modification at glutamic acid-61 and cystine-1 and of organic solvents on the enzymatic activity. 42 34

The in vitro folding kinetics of a fragment corresponding to an intact dimer of the Cgamma3 domain of human IgG1 (pFc') were monitored via the large changes in tryptophan fluorescence which accompany these processes. In going from the guanidine hydrochloride (Gdn.HCl) induced unfolded state (4.0 M Gdn.HCl) to the native state (0.5 M Gdn.HCl), three well-separated first-order processes were observed having time constants of 5, 50, and 350 s and roughly equal amplitudes. These values were concentration independent, a fact consistent with there being no fluorescence change accompanying dimerization. These time constants are one to two orders of magnitude slower than those observed for proteins of similar size such as ribonuclease or cytochrome c, most probably reflecting the complex processes involved in forming the correct beta-sheet arrangement of immunoglobulin domains. The corresponding unfolding transition is biphasic having time constant values of 50 and 500 s, the latter comprising 80% of the fluorescence change. These data indicate the presence of at least one species with intermediate fluorescence along the unfolding pathway. Gdn.HCl concentration jumps were also performed over various intervals within the transition zone. The results are not consistent with a fully reversible mechanism. In the absence of the intrachain disulfide bond, pFc' exists in an unfolded state even at 0.5 M Gdn.HCl. In a concomitant refolding and reoxidation experiment (at 0.5 M Gdn.HCl and using an optimal disulfide interchange catalytic system), the time constant for disulfide formation was in the range of 80--200 s and the fluorescence change revealed a lag phase analyzable in terms of rate-limiting reoxidation and refolding times consistent with those observed for the initially disulfide bonded species. Under similar conditions but a 4 M Gdn.HCl, reoxidation was more than two orders of magnitude slower, suggesting that reoxidation is directed by a refolding nucleation event.
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PMID:Folding pathways of immunoglobulin domains. The folding kinetics of the Cgamma3 domain of human IgG1. 46 72

Though DNase does not contain any cysteine residues, incubation of the enzyme with 2-nitro-5-thiocyanobenzoic acid in the presence of Ca2+ at pH values above 7.5 results in an irreversible inactivation of the enzyme. The inactivation also occurs when Ca2+ is replaced by Mg2+, but not in their absence. Amino acid analyses after acid hydrolyses of the completely inactivated ant the native enzymes show no significant differences in composition, including tryptophan and half-cystine residues. However, sodium dodecyl sulfate gel electrophoresis indicates enzyme cleavage by the treatment with 2-nitro-5-thiocyanobenzoic acid. This reagent does not inactivate chymotrypsin and lysozyme, and under conditions where bovine DNase is inactivated, does not inactivate other nucleases such as ribonuclease, snake venom phosphodiesterase, and spleen acid DNase. However, it inactivates malt DNase and can, therefore, be considered a specific inhibitor of DNase I. The inactivation kinetics is pseudo-first order, resembling Michaelis-Menten, with an affinity constant of 16.7 mM. It is the cyano group, not the thionitrobenzoic acid of 2-nitro-5-thiocyanobenzoic acid that reacts to form cyano-DNase.
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PMID:Inactivation of bovine pancreatic DNase by 2-nitro-5-thiocyanobenzoic acid. I. A novel inhibitor for DNase I. 48 54

The effects of fasting, and subsequent force-feeding of L-tryptophan on the activity of hepatic nuclear DNA-dependent RNA polymerases were studied in adult (5-6 weeks old), and old (5-6 months) male Wistar rats. Liver nuclei, nucleoli, and nucleoplasmic fraction were isolated from rats following a single tube-feeding of tryptophan or water, and were assayed in vitro for the activity of different RNA polymerases. Whereas in adult rats 24 h of fasting caused a significant reduction in the activity of RNA polymerase I and II, in old rats the activity of only polymerase II was decreased after 24 h of fasting. In fasted adult rats administration of tryptophan promptly restored the activities of both polymerases to the respective normal fed levels, while in old rats none of the polymerases were affected by tryptophan. In fasted adult rats the pattern of response for both forms of polymerases to a single tube-feeding of tryptophan, over a period of 5 h, was found to be biphasic. When ribonuclease activity of nuclei was suppressed by performing incubations at low temperatures (17-30 degrees C) the difference between the two groups for polymerase I was greatly reduced, and for polymerase II the difference was fully abolished. Pre-treatment of fasted adult rats with cycloheximide (1.5 mg/kg) was found to abolish the 30 min tryptophan-mediated stimulation of both polymerase I and II activities. In cycloheximide pretreated rats the activity of polymerase II, but not polymerase I returned to its original level 5 h after tryptophan force-feeding.
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PMID:Effects of fasting and tryptophan force-feeding on the activity of hepatic nuclear RNA polymerases in rats. 52 54


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