Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound   Target Concepts: Gene/Protein Disease Symptom Drug Enzyme Compound

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Query: EC:3.1.26.9 (ribonuclease)
6,589 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

1. A simple method for the preparation of ribonuclease-free ribosomal RNA is described in which ribonuclease-deficient bacteria are treated with acetone and the RNA is extracted with phenol and purified by precipitating it with potassium acetate. The treatment with acetone appears to render the cell wall permeable to RNA but not to DNA during the extraction with phenol. The method thus avoids the need to disrupt the bacteria and greatly simplifies the subsequent purification. 2. The method has been used successfully with ribonuclease-deficient strains of Escherichia coli, Pseudomonas fluorescens and Staphylococcus epidermidis. The recovered purified RNA accounts for about 70% of the total ribosomal RNA and shows the normal sedimentation pattern of the 16s and 23s components in the analytical centrifuge.
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PMID:The preparation of ribosomal ribonucleic acid from whole bacteria. 486 33

1. The ;30s' and ;50s' ribosomes from ribonuclease-active (Escherichia coli B) and -inactive (Pseudomonas fluorescens and Escherichia coli MRE600) bacteria have been studied in the ultracentrifuge. Charge anomalies were largely overcome by using sodium chloride-magnesium chloride solution, I 0.16, made 0-50mm with respect to Mg(2+). 2. Differentiation of enzymic and physical breakdown at Mg(2+) concentrations less than 5mm was made by comparing the properties of E. coli B and P. fluorescens ribosomes. 3. Ribonuclease-active ribosomes alone showed a transformation of ;50s' into 40-43s components. This was combined with the release of a small amount of ;5s' material which may be covalently bound soluble RNA. Other transformations of the ;50s' into 34-37s components were observed in both ribonuclease-active and -inactive ribosomes at 1.0-2.5mm-Mg(2+), and also with E. coli MRE600 when EDTA (0.2mm) was added to a solution in 0.16m-sodium chloride. 4. Degradation of ribonuclease-active E. coli B ribosomes at Mg(2+) concentration 0.25mm or less was coincident with the formation of 16s and 21s ribonucleoprotein in P. fluorescens, and this suggested that complete dissociation of RNA from protein was not an essential prelude to breakdown of the RNA by the enzyme. 5. As high Cs(+)/Mg(2+) ratios cause ribosomal degradation great care is necessary in the interpretation of equilibrium-density-gradient experiments in which high concentrations of caesium chloride or similar salts are used. 6. The importance of the RNA moiety in understanding the response of ribosomes to their ionic environment is discussed.
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PMID:The sedimentation behaviour of ribonuclease-active and -inactive ribosomes from bacteria. 532 3

1. A comparison has been made between the ribonuclease activities of untreated ribosomes from Escherichia coli B and Pseudomonas fluorescens and the activities of ribosomes on to which ribosomal ribonuclease from E. coli B has been adsorbed. 2. The normal ribosomes from both species were stable in 5-10mm-Mg(2+) (I0.16) at pH6. The RNA in ribosomes from Ps. fluorescens was attacked by the adsorbed ribonuclease under these conditions, whereas the ribosomes from E. coli B were able to adsorb and inhibit this enzyme. 3. Inhibition was also observed with ribosomes from Aerobacter aerogenes, Proteus vulgaris and two other strains of E. coli. It was not observed in ribosomes from three species of Pseudomonas. 4. The inhibition depended on the integrity of the ribosomes and was not observed under conditions of low Mg(2+) concentration that cause irreversible degradation into more slowly sedimenting particles.
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PMID:The inhibition of ribosomal ribonuclease by bacterial ribosomes. 532 18

The production of extracellular deoxyribonuclease and ribonuclease by 23 marine and 3 dairy strains of Pseudomonas putrefaciens, 15 strains of fish-pathogenic fluorescent pseudomonads, 38 strains of fluorescent pseudomonads isolated from haddock, and 34 related organisms was determined by an agar plate method. All strains of P. putrefaciens produced both deoxyribonuclease and ribonuclease. Of the other 87 organisms examined, 26.5% produced ribonuclease and 14.5% produced deoxyribonuclease. All organisms which produced deoxyribonuclease also produced ribonuclease. Deoxyribonuclease production by P. putrefaciens is suggested as a useful criterion of identity for members of this intense fish spoilage species.
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PMID:Extracellular nuclease activity of fish spoilage bacteria, fish pathogens, and related species. 579 36

Shiio, Tsuru (Washington State University, Pullman), and Bruce A. McFadden. Cell-free amino acid-incorporating system from Pseudomonas indigofera. J. Bacteriol. 90:978-983. 1965.-A cell-free preparation from Pseudomonas indigofera incorporated C(14)-phenylalanine and C(14)-leucine into a product which was insoluble in hot trichloroacetic acid. The phenylalanine incorporation process, which had a temperature optimum of 30 C and a pH optimum of 7.6, had many characteristics of protein synthesis. The process depended upon both "ribosomes" and supernatant fraction from centrifugation at 105,000 x g. Incorporation required adenosine triphosphate, apparently depended upon guanosine triphosphate, and was inhibited by chloramphenicol, puromycin, actinomycin, ribonuclease, and deoxyribonuclease. Leucine incorporation was also studied and had many similar characteristics. C(14)-phenylalanine uptake was stimulated by sRNA or polyuridylic acid, and together these substances had a synergistic effect upon stimulation. The incorporation of C(14)-phenylalanine into a product which was precipitated by antiserum to crystalline isocitrate lyase was also observed.
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PMID:Cell-free amino acid-incorporating system from Pseudomonas indigofera. 584 10

This paper presents an analysis of the protective properties of the components in ribonuclease (RNase)-sensitive ribosomal vaccines, in particular the ribonucleic acid (RNA). The protective activities in mice of purified ribosomes derived from Pseudomonas aeruginosa and from Listeria monocytogenes were compared. Both ribosomal vaccines had to be combined with the adjuvant dimethyldioctadecylammonium bromide (DDA) in order to be protective, and both lost their activity after RNase treatment. The ribosomal vaccines as well as RNA purified from the ribosomes induced non-specific protection. Intraperitoneal injection of RNA with DDA induced an influx of peritoneal cells. Furthermore, RNA with DDA activated macrophages as shown by, a.o., enhanced phagocytic activity and killing capacity for L. monocytogenes. The results suggest that the observed macrophage activation is probably T-cell-independent. With regard to the ribosomal vaccine of P. aeruginosa it is concluded that RNA also contributed to the protective activity by increasing the humoral response against suboptimal concentrations of contaminating cell surface antigens. In conclusion, it is proposed that ribosomal vaccines may be considered as a combination of a non-specific immunomodulator (RNA) with pathogen-specific cell surface antigens. This concept of ribosomal vaccines is discussed in relation to the literature concerning RNase-sensitive ribosomal vaccines.
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PMID:Ribonuclease-sensitive ribosomal vaccines. 608 81

Phage X was isolated from sewage as plating on Escherichia coli or Salmonella typhimurium strains harbouring the incompatibility group X plasmid R6K. It also plated on a strain of Serratia marcescens carrying this plasmid. It failed to form plaques on Proteus mirabilis, P. morganii or Providencia alcalifaciens harbouring R6K, but did multiply on them. No phage increase occurred with homologous R- strains. Phage X also plated or registered an increase in titre on E. coli or S. typhimurium strains carrying various plasmids of incompatibility groups M, N, P-1, U or W as well as the unassigned plasmid R775. It adsorbed to pili determined by a group P-10 plasmid in a Pseudomonas aeruginosa strain but did not multiply on this organism. The phage was filamentous and curly, resistant to ribonuclease and diethyl ether and sensitive to chloroform. It adsorbed to the tips of pili.
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PMID:Phage X: a plasmid-dependent, broad host range, filamentous bacterial virus. 612 39

In mice, active protection against Pseudomonas aeruginosa could be induced with two fractions derived from a crude preparation of ribosomes from P. aeruginosa. The two fractions were obtained by gel filtration chromatography of the crude ribosomal preparation on Sepharose CL-2B. In fraction I, less than 1% of the ribonucleic acid (RNA) applied to the column was recovered. Fraction II contained RNA and protein in a ratio of 1.94. The presence of ribosomes in this fraction was confirmed by analysis on a sucrose density gradient. The protection by fraction I was not affected by treatment with ribonuclease; in contrast, incubation of fraction II with ribonuclease completely abolished active protection. Fraction I contained lipopolysaccharide (LPS) as was indicated by the presence of 2-keto-3-deoxyoctonic acid. No LPS was found in fraction II. The adjuvant dimethyl dioctadecyl ammonium bromide enhanced the protection by fraction II; however, immunity by a low dose of fraction I was abolished by dimethyl dioctadecyl ammonium bromide. Protection by fractions I and II appeared to be restricted to the homologous serotype of P. aeruginosa. These results indicate that RNA is required for protection by fraction II. Active protection by fraction I is likely due to LPS.
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PMID:Ribonuclease-sensitive ribosomal vaccine of Pseudomonas aeruginosa. 615 37

The mechanism of enterovirus inactivation by marine bacteria was investigated using poliovirus type 1 as a model virus and with strains of Pseudomonas and Vibrio isolated from the marine environment. Treatment of virus with cell-free filtrates from late log phase bacterial cultures produced alterations in the viral capsid as shown by a reduction in efficiency of adsorption to host cells, increased sensitivity to ribonuclease, and by the release of ribonucleic acid from the treated virions. Filtration of 14C-labelled, treated virus through 25-nm filters revealed that the majority of the isotope (85-96%) passed the filters, indicating extensive capsid disruption. However, the most rapid and pronounced change observed during virus inactivation was the loss of infectivity, suggesting that enzymatic degradation is not the first event in the poliovirus inactivation process by marine bacteria.
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PMID:Mechanism of poliovirus inactivation by cell-free filtrates of marine bacteria. 632 46

Bacteria were isolated from lake water, and their ability to remain viable in a dilute, nutrient-deficient environment was tested by a method that permits suspension of test bacteria between two appressed microporous membranes in an aqueous environment. This approach permitted separation of the lake isolates into two categories. Members of the tribe Klebsielleae were shown to have a prolonged survival rate of 40% or better after 24 h, whereas nonsurvivors were not viable for much longer than 24 h. These nonsurvivors belonged to the genera Acinetobacter, Aeromonas, Alcaligenes, Erwinia, Escherichia, Flavobacterium, and Pseudomonas. Differences in ribonuclease and adenosine triphosphatase levels between Escherichia coli (nonsurvivor) and Klebsiella (survivor) cells were detected. At pH 7.5, stressed E. coli cells contained 14% of the adenosine triphosphatase activity detected in the control, whereas at pH 5.5, in the presence of calcium ions, these same cells contained 50% of the control adenosine triphosphatase levels. At pH 7.2, E. coli cells were strongly inhibited by an adenosine triphosphatase inhibitor, bathophenanthroline (88%); oligomycin (64%); and the proton ionophore carbonyl- cyanide-m-chlorophenyl hydrazone (67%). Both sodium azide and valinomycin were only moderately inhibitory (15 and 28%, respectively). Although the ability to scavenge internal endogenous reserves seems important, we postulate that certain enteric bacteria are capable of utilizing acidic conditions (pH 5.5) as an electrochemical gradient to generate necessary high-energy intermediates for prolongation of survival beyond that possible in environments of near-neutraL pH.
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PMID:Bacterial survival in a dilute environment. 645 90


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