Gene/Protein Disease Symptom Drug Enzyme Compound
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Query: EC:2.7.7.7 (DNA polymerase)
 17,007 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

This study reports the development of a novel multiplex PCR assay based on SCAR (Sequence-Characterised Amplified Region) markers for the simultaneous diagnosis of the 7 Eimeria species that infect domestic fowl. Primer pairs specific for each species were designed in order to generate a ladder of amplification products ranging from 200 to 811 bp. Sensitivity tests for each species were carried out, showing a detection threshold of 1-5 pg, which corresponds approximately to 2-8 sporulated oocysts. Distinct isolates of the 7 Eimeria species from different geographical sources were tested and successfully detected by the assay. All the species were amplified homogeneously, whether or not one of them was present in a high quantity, indicating that there was no cross-interference. The assay was also tested with different sources of Taq DNA polymerase and thermocycler models, confirming the high reproducibility of the reaction. The economy of consumables and labour represented by a single-tube reaction greatly facilitates the molecular diagnosis of a large number of samples, making it appropriate for field epizootiological surveys. We propose the use of this multiplex PCR assay as a rapid and cost-effective diagnostic method for the detection and discrimination of the 7 Eimeria species that infect domestic fowl.
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PMID:A multiplex PCR assay for the simultaneous detection and discrimination of the seven Eimeria species that infect domestic fowl. 1463 18

Embelia ribes Burm. f. (Myrsinaceae) is one of the important plants used in Indian traditional medicine. RAPD-PCR analysis was performed to obtain species-specific DNA fragments. A band of 906 bp that was specific to Embelia ribes irrespective of the geographical source was obtained using the random decamer primer OPF 05. SCAR primers ER 1 (27 mer) and ER 2 (26 mer) were designed from the sequence of the RAPD marker which yielded an expected amplicon of 594 bp with the Embelia ribes DNA only. This methodology can be used for species identification of genuine Embelia ribes and to distinguish it from common substitutes and adulterants. BLAST: basic local alignment search tool ER 1: Embelia ribes forward primer ER 2: Embelia ribes reverse primer RAPD-PCR: random amplification of polymorphic DNA polymerase chain reaction SCAR: sequence characterized amplified region.
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PMID:Genetic characterization and authentication of Embelia ribes using RAPD-PCR and SCAR marker. 1821 Mar 50

The invasive larger grain borer Prostephanus truncatus (Horn) is the most important pest of farm-stored maize in Africa. It was introduced into the continent from Mesoamerica in the late 1970s and by 2008 had spread to at least 18 countries. Classical biological control using two populations of the predator Teretrius nigrescens Lewis achieved long-term and cost effective control in warm-humid areas, but not in cool and hot-dry zones. The present study investigated the phylogenetic relationships between geographical populations of the predator. Ten populations of T. nigrescens were studied using randomly amplified polymorphic DNA polymerase chain reaction (RAPD-PCR), sequence analysis of mitochondrial Cytochrme oxydase 1 (mtCOI) gene and ribosomal internally transcribed spacers (ITS) 1, 5.8S and ITS2. The mtCOI variation revealed two clades associated with geographical regions in Central America. It also reveals a significant isolation by distance between populations and considerable genetic shifts in laboratory rearing. RAPD-PCR did not reveal any potential SCAR diagnostic markers. The ITS variation mainly involved insertions and deletions of simple sequence repeats even within individuals. This study reveals the existence of two different mitochondrial lineages of the predator, associated with the geographical origin of populations distinguishable by fixed mutations on the mtCOI gene. The populations of T. nigrescens released in Africa belonged to two different clades from Meso America, namely south (released in West Africa) and north (released in eastern Africa). However, more polymorphic markers are required to clarify the observations in demographic time scales.
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PMID:Phylogeographic structure of Teretrius nigrescens (Coleoptera: Histeridae) predator of the invasive post harvest pest Prostephanus truncatus (Coleoptera: Bostrichidae). 2149 92