Gene/Protein Disease Symptom Drug Enzyme Compound
Pivot Concepts:   Target Concepts:
Query: EC:2.7.7.7 (DNA polymerase)
 17,007 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

A polymerase chain reaction (PCR) assay was developed for detecting duck plague virus. A 765-bp EcoRI fragment cloned from the genome of the duck plague vaccine (DP-VAC) virus was sequenced for PCR primer development. The fragment sequence was found by GenBank alignment searches to be similar to the 3' ends of an undefined open reading frame and the gene for DNA polymerase protein in other herpesviruses. Three of four primers sets were found to be specific for the DP-VAC virus and 100% (7/7) of field isolates but did not amplify DNA from inclusion body disease of cranes virus. The specificity of one primer set was tested with genome templates from other avian herpesviruses, including those from a golden eagle, bald eagle, great horned owl, snowy owl, peregrine falcon, prairie falcon, pigeon, psittacine, and chicken (infectious laryngotracheitis), but amplicons were not produced. Hence, this PCR test is highly specific for duck plague virus DNA. Two primer sets were able to detect 1 fg of DNA from the duck plague vaccine strain, equivalent to five genome copies. In addition, the ratio of tissue culture infectious doses to genome copies of duck plague vaccine virus from infected duck embryo cells was determined to be 1:100, making the PCR assay 20 times more sensitive than tissue culture for detecting duck plague virus. The speed, sensitivity, and specificity of this PCR provide a greatly improved diagnostic and research tool for studying the epizootiology of duck plague.
 ...
PMID:Identification of duck plague virus by polymerase chain reaction. 1021 66

Potato (Solanum tuberosum) is one of the most important crops in the Balearic Islands with a yield of 35,000 t in 2004, distributed in 1,100 ha and mostly located in the Sa Pobla Region of Mallorca Island. Potato cyst nematode (PCN) species are widespread in potato crop regions of the Iberian Peninsula and Canary Islands, but only Globodera pallida is known to be present in Sa Pobla (1) where it causes significant yield reductions if it is not properly managed. In the spring of 2000, goldencolored females were detected in several root samples of plant potatoes. In 2001, 2002, and 2003, soil and root samples were collected at harvest from 28 fields to identify and quantify PCN species in this area. According to the European Plant Protection Organization (EPPO) diagnostic protocol, the identification of Globodera spp. populations was based on: (i) morphological and morphometrics characteristics of cyst vulval area and stylets of second-stage juveniles; (ii) protein electrophoresis patterns by isoelectric focusing (2); and (iii) DNA analysis by random amplified polymorphic DNA polymerase chain reaction techniques (2). PCN infestation was detected in 16 potato fields sampled. Mixed populations of G. rostochiensis and G. pallida were found in 14 fields distributed all around Sa Pobla, while two fields contained only G. pallida. The proportion of G. rostochiensis in mixed populations was low, rarely exceeding 20%. The origin of G. rostochiensis introduction in Mallorca is unknown since there is no direct link with other potato-growing areas of Spain. To our knowledge, this is the first report of G. rostochiensis in the Balearics Islands. The identification of G. rostochiensis in the Sa Pobla potato-production fields is very important for the development of a successful integrated pest management (IPM) program in this region. References: (1) M. L. Martinez-Beringola et al. Nematol. Medit. 15:183, 1987. (2) S. K. Ibrahim et al. Pest Manag. Sci. 57:1068, 2001.
 ...
PMID:First Report of Globodera rostochiensis in Mallorca Island, Spain. 3078 Nov 19