Gene/Protein Disease Symptom Drug Enzyme Compound
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Query: EC:1.2.1.13 (glyceraldehyde-3-phosphate dehydrogenase)
 6,511 document(s) hit in 31,850,051 MEDLINE articles (0.00 seconds)

Callus cultures of Arabidopsis thaliana (cv. Columbia) in Petri dishes were exposed to altered g-forces by centrifugation (1-10 g). Using semi-quantitative RT-PCR transcripts of genes coding for metabolic key enzymes (ADP-glucose pyrophosphorylase, ADPG-PP; beta-amylase, fructose-1,6-bisphosphatase, FBPase; glyceraldehyde-P dehydrogenase, GAPDH; hydroxymethylglutaryl-CoA reductase, HMG; phenylalanine-ammonium-lyase, PAL; PEP carboxylase, PEPC) were used to monitor threshold conditions for g-number (all) and time of exposure (beta-amylase) which led to altered amounts of the gene product. Exposure to approximately 5 g and higher for 1 h resulted in altered transcript levels: transcripts of beta-amylase, PAL, and PEPC were increased, those of ADPG-PP decreased, while those of FBPase, GAPDH, and HMG were not affected. This probably indicates a shift from starch synthesis to starch degradation and increased rates of anaplerosis (PEPC: supply of ketoacids for amino acid synthesis). In order to get more information about g-related effects on gene expression, we used a 1-h exposure to 7 g for a microarray analysis, using a commercial A. thaliana chip with 4105 unique annotated clusters/genes (IncyteGenomics). Transcripts of more than 200 genes were significantly increased in amount (ratio 7 g/1 g control; 2(1.6) and larger). They fall into several categories. Transcripts coding for enzymes of major pathways form the largest group (25%), followed by gene products involved in cellular organization and cell wall formation/rearrangement (17%), signalling, phosphorylation/dephosphorylation (12%), proteolysis and transport (10% each), hormone synthesis plus related events (8%), defense (4%), stress-response (2%), and gravi-sensing (2%). Many of the alterations are part of a general stress response, but some changes related to the synthesis/rearrangement of cell wall components could be more hyper-g-specific. We only found few gene products, which were decreased in relation to 1 g controls, and these were less significant (ratio < 2(1.6)). We thus assume that g-forces above a threshold of about 5 g for 1 h are sensed by plant cells in general, causing distinct metabolic responses, which obviously in part, are regulated by gene expression.
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PMID:Hyper-gravity effects on the Arabidopsis transcriptome. 1455 51

Quantitative real-time reverse-transcriptase PCR (qRT-PCR) is a powerful tool for the measurement of gene expression; however, the accuracy of this approach depends on the stability of reference genes. The objective of the present study was to identify the stable reference genes in orchardgrass (Dactylis glomerata L.), a principal cool-season forage grass in the world. Ten candidate reference genes were selected in this study including ATP-binding [ABC], actin [ACTIN], cyclophilin [CYP2], glyceraldehyde 3-phosphate dehydrogenase [GAPDH], beta-amylase 4 [BAM4], zeitlupe [ZTL], MAP Kinase 4 [MPK4], ubiquitin-conjugating enzyme [UBC], S-adenosylmethionine decarboxylase [SAMDC], and translationally controlled tumor protein [TCTP]. The candidate genes were assessed in orchardgrass leaves and roots under conditions of drought, high salinity, heat, waterlogging, and abscisic acid (ABA) treatments. We used GeNorm, BestKeeper, NormFinder, and RefFinder for qRT-PCR normalization and validation to determine that the expression of these reference genes was stress-dependent. ACTIN, CYP2, and ABC were found to be the most stably expressed genes for drought stress while ACTIN, TCTP, and ABC were the most stable under salt stress. ACTIN, CYP2, and ABC were all found to be good reference genes for studying heat stress. Likewise, CYP2, MPK4, and ABC were most suitable to study waterlogging, and ACTIN, CYP2, and MPK4 were determined as the three best reference genes for ABA studies. Our study identified and validated the possible reference genes in orchardgrass that may be used for quantification of target gene expression under various abiotic stresses.
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PMID:Reference gene selection for quantitative real-time reverse-transcriptase PCR in orchardgrass subjected to various abiotic stresses. 2530 67

Blumeria graminis f.sp. tritici (Bgt) infection greatly interferes with the normal source-sink relationships and always causes tremendous loss of yield and quality in wheat. To better understand the impact of this pathogen on grain development, proteome characterization during grain development in susceptible wheat cultivar Xinong 979 infected by powdery mildew was investigated by 2-DE and tandem MALDI-TOF/TOF-MS. Identification of 111 differentially expressed protein spots representing 85 unique proteins and six expression patterns showed a chronological description of wheat grain formation. Comparative proteome profiles indicated that 43 protein spots displayed significant abundance change, which is mainly involved in stress/defense responses, primary metabolism, and storage protein. The down-regulation of defense response-related proteins including alpha-purothionin, lactoylglutathione lyase, and alpha-amylase inhibitor CM16 in infected grains compared to control during seed filling might be related to the susceptibility of wheat to Bgt, while the enhanced expression of beta-amylase and glyceraldehyde-3-phosphate dehydrogenase and the down-regulation of ADP glucose pyrophosphorylase in infected grains probably resulted in the negative effects on yield formation. Our data reveal the complex grain metabolism mechanisms and defense responses during compatible interactions of wheat and Bgt, and provide valuable information for further understanding of the underlying molecular processes which can possibly yield novel strategies for breeding resistant cultivars and protection strategies in the field.
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PMID:Proteomic analysis of developing wheat grains infected by powdery mildew (Blumeria graminis f.sp. tritici). 2864 81